Mir-8-P2a

MirGeneDB ID

Sto-Mir-8-P2a

Family name

MIR-8 (all species)

Seed

AACACUG

Species

Cloudy Catshark (Scyliorhinus torazame)

MiRBase ID

Paralogues

Sto-Mir-8-P1a Sto-Mir-8-P3a

Orthologues

Aae-Mir-8 Aca-Mir-8-P2a Ami-Mir-8-P2a Asu-Mir-8 Bfl-Mir-8-P2 Bge-Mir-8 Bla-Mir-8-P2 Bpl-Mir-8 Bta-Mir-8-P2a Cbr-Mir-8 Cel-Mir-8 Cfa-Mir-8-P2a Cgi-Mir-8 Cin-Mir-8-P2 Cli-Mir-8-P2a Cmi-Mir-8-P2a Cpi-Mir-8-P2a Cpo-Mir-8-P2a Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dno-Mir-8-P2a Dpu-Mir-8 Dre-Mir-8-P2a Dsi-Mir-8 Dya-Mir-8 Esc-Mir-8 Ete-Mir-8-P2a Gga-Mir-8-P2a Gja-Mir-8-P2a Gmo-Mir-8-P2a Hme-Mir-8 Hsa-Mir-8-P2a Isc-Mir-8 Lan-Mir-8 Lch-Mir-8-P2a Lgi-Mir-8 Loc-Mir-8-P2a Mal-Mir-8-P2a Mdo-Mir-8-P2a Mml-Mir-8-P2a Mmu-Mir-8-P2a Mun-Mir-8-P2a Npo-Mir-8 Oan-Mir-8-P2a Obi-Mir-8 Ocu-Mir-8-P2a Ovu-Mir-8 Pbv-Mir-8-P2a Pfl-Mir-8 Pmi-Mir-8 Rno-Mir-8-P2a Sha-Mir-8-P2a Sko-Mir-8 Spt-Mir-8-P2a Spu-Mir-8 Tca-Mir-8 Tgu-Mir-8-P2a Tni-Mir-8-P2a Xla-Mir-8-P2a1 Xla-Mir-8-P2a2 Xtr-Mir-8-P2a

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(GCA_003427355_STO_add)

BFAA01000031.1: 1281806-1281866 [+]

Precursor
(pre-Mir +30nt flank)

AGUUCGGAUCAGAUCAUGGUCCUCUGUGGGCAUCUUACUAGACAGUGCUGGAUUGCACUGCUAGGUUCUAACACUGUCUGGUAACGAUGUUUAAAGAGUGUUCCACAAUCAACAGCCACUG

Get precursor sequence

Structure

        10        20          30         40        50         
AGUUCGGAUCAGAUCAUGGUC--    G        -|            C    UUGCAC 
                       CUCU UGGGCAUC UUACUAGACAGUG UGGA      U
                       GAGA AUUUGUAG AAUGGUCUGUCAC AUCU      G
GUCACCGACAACUAACACCUUGU    A        C^            A    UGGAUC 
 .       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

UG at 5p(-14)

Tissue expression

To

Star sequence

Sto-Mir-8-P2a_5p*

mirBase accession

None

Sequence

0- CAUCUUACUAGACAGUGCUGGA -22

Get sequence

Mature sequence

Sto-Mir-8-P2a_3p

mirBase accession

None

Sequence

38- UAACACUGUCUGGUAACGAUGUU -61

Get sequence