MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-8-P1o2

Family name MIR-8 (all species)
Seed AAUACUG
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-200b
Paralogues Pma-Mir-8-P2o2  Pma-Mir-8-P3o2 
Orthologues Aae-Mir-8  Aga-Mir-8  Agr-Mir-8  Asu-Mir-8  Bfl-Mir-8-P1-v1  Bfl-Mir-8-P1-v2  Bge-Mir-8  Bko-Mir-8  Bla-Mir-8-P1  Bpl-Mir-8  Cbr-Mir-8  Cel-Mir-8  Cin-Mir-8-P1  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dgr-Mir-8  Dlo-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dpu-Mir-8  Dsi-Mir-8  Dya-Mir-8  Eba-Mir-8  Egr-Mir-8  Esc-Mir-8  Gpa-Mir-8  Gsa-Mir-8  Hme-Mir-8  Hru-Mir-8  Isc-Mir-8  Lan-Mir-8  Lgi-Mir-8  Lhy-Mir-8  Llo-Mir-8  Mgi-Mir-8  Mom-Mir-8  Npo-Mir-8  Obi-Mir-8  Ofu-Mir-8  Ovu-Mir-8  Pau-Mir-8  Pca-Mir-8  Pdu-Mir-8  Pfl-Mir-8  Pmi-Mir-8  Pve-Mir-8  Rph-Mir-8  Sko-Mir-8  Sma-Mir-8  Snu-Mir-8  Spu-Mir-8  Tca-Mir-8  Tur-Mir-8  War-Mir-8 
Node of Origin (locus) P. marinus
Node of Origin (family) Nephrozoa
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046107.1: 8650259-8650316 [+] UCSC Ensembl
Clustered miRNAs
(< 50kb from Mir-8-P1o2)		 Mir-8-P1o2 NC_046107.1: 8650259-8650316 [+] UCSC Ensembl
Mir-8-P3o2 NC_046107.1: 8664757-8664820 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGGGAGGGGGGAAACCAGGGGAGCUGCUGCCAUCUUACCUGGUGGUAUUGGGUCAAACUGAAUUCUAAUACUGCCUGGUAAUGAUGGUGGCCGCCCACCCAUCAACAACAAUCGACAA
Get precursor sequence
Structure
        10         20         30         40        50        
GGGGAGGGGGGAAACCA-   GA-  U  UG     -|    U  UG        UCAAA 
                  GGG   GC GC  CCAUC UUACC GG  GUAUUGGG     \
                  CCC   CG CG  GGUAG AAUGG CC  CAUAAUCU     C
AACAGCUAACAACAACUA   ACC  C  GU     U^    U  GU        UAAGU 
      110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Drosha site -1 on both arms.
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Star sequence

Pma-Mir-8-P1o2_5p*
mirBase accessionMIMAT0019509
Sequence 
0- CAUCUUACCUGGUGGUAUUGGG -22
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Mature sequence

Pma-Mir-8-P1o2_3p
mirBase accessionMIMAT0019510
Sequence 
35- UAAUACUGCCUGGUAAUGAUGGU -58
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