Mir-8-P3o2

MirGeneDB ID

Pma-Mir-8-P3o2

Family name

MIR-8 (all species)

Seed

AAUACUG

Species

Sea Lamprey (Petromyzon marinus)

MiRBase ID

pma-mir-429

Paralogues

Pma-Mir-8-P1o2 Pma-Mir-8-P2o2

Orthologues

Aae-Mir-8 Aga-Mir-8 Agr-Mir-8 Asu-Mir-8 Bfl-Mir-8-P3 Bge-Mir-8 Bko-Mir-8 Bla-Mir-8-P3 Bpl-Mir-8 Cbr-Mir-8 Cel-Mir-8 Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dpu-Mir-8 Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Egr-Mir-8 Esc-Mir-8 Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Isc-Mir-8 Lan-Mir-8 Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Mgi-Mir-8 Mom-Mir-8 Npo-Mir-8 Obi-Mir-8 Ofu-Mir-8 Ovu-Mir-8 Pau-Mir-8 Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rph-Mir-8 Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spu-Mir-8 Tca-Mir-8 Tur-Mir-8 War-Mir-8

Node of Origin (locus)

P. marinus

Node of Origin (family)

Nephrozoa

Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)

NC_046107.1: 8664757-8664820 [+] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-8-P3o2)

Mir-8-P1o2 NC_046107.1: 8650259-8650316 [+] UCSC Ensembl
Mir-8-P3o2 NC_046107.1: 8664757-8664820 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAAUACCAAAUACGUUUGCGUGCUGCCGGCGAUCCUUACCAGGCAAGCUUAGAUUCCUCUGCUGAUCCUAUCUAAUACUGUCUGGUAAUGUCGCCGGCGGUGUGCCGAGUCCACCAAAGACGAC

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Structure

        10          20        30        40        50        60  
GAAUACCAAAUACGUUU--|  UG           CC          AGC     UUCCUCUG 
                   GCG  CUGCCGGCGAU  UUACCAGGCA   UUAGA        \
                   CGU  GGCGGCCGCUG  AAUGGUCUGU   AAUCU        C
CAGCAGAAACCACCUGAGC^  GU           U-          CAU     AUCCUAGU 
  120       110       100        90         80        70

Deep sequencing

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Comment

There is a single snp between the assembled genome and the miRBase entry.

3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

Br	Gi	Gu	He	Ki	La	Li	Mo	Mu	Sk

Star sequence

Pma-Mir-8-P3o2_5p*

mirBase accession

MIMAT0019546

Sequence

0- GAUCCUUACCAGGCAAGCUUAGA -23

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Mature sequence

Pma-Mir-8-P3o2_3p

mirBase accession

MIMAT0019547

Sequence

42- UAAUACUGUCUGGUAAUGUCGC -64

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