MirGeneDB ID | Ebu-Mir-8-P1o1 |
Family name |
MIR-8 (all species) |
Seed |
AAUACUG |
Species |
Inshore hagfish (Eptatretus burgeri) |
MiRBase ID |
|
Paralogues |
Ebu-Mir-8-P2o1
Ebu-Mir-8-P3o1
|
Orthologues |
Aae-Mir-8
Aga-Mir-8
Agr-Mir-8
Asu-Mir-8
Bfl-Mir-8-P1-v1
Bfl-Mir-8-P1-v2
Bge-Mir-8
Bko-Mir-8
Bla-Mir-8-P1
Bpl-Mir-8
Cbr-Mir-8
Cel-Mir-8
Cin-Mir-8-P1
Csc-Mir-8
Cte-Mir-8
Dan-Mir-8
Dgr-Mir-8
Dlo-Mir-8
Dma-Mir-8
Dme-Mir-8
Dmo-Mir-8
Dpu-Mir-8
Dsi-Mir-8
Dya-Mir-8
Eba-Mir-8
Egr-Mir-8
Esc-Mir-8
Gpa-Mir-8
Gsa-Mir-8
Hme-Mir-8
Hru-Mir-8
Isc-Mir-8
Lan-Mir-8
Lgi-Mir-8
Lhy-Mir-8
Llo-Mir-8
Mgi-Mir-8
Mom-Mir-8
Npo-Mir-8
Obi-Mir-8
Ofu-Mir-8
Ovu-Mir-8
Pau-Mir-8
Pca-Mir-8
Pdu-Mir-8
Pfl-Mir-8
Pmi-Mir-8
Pve-Mir-8
Rph-Mir-8
Sko-Mir-8
Sma-Mir-8
Snu-Mir-8
Spu-Mir-8
Tca-Mir-8
Tur-Mir-8
War-Mir-8
|
Node of Origin (locus) |
E. burgeri
|
Node of Origin (family) |
Nephrozoa
|
Genome context (Eburgeri_3) |
FYBX02010353.1: 2518841-2518898 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGGGAAGAUGUGUCUUUGGGAAACCGCUUCCAUCAUUCCGGGCGGUAUUGGGUAGAAAUCGAUUCUAAUACUGCCUGGUAAUGAUGAUAGCUGCUUUCCAUUUGUCAUCAUGCACUCC
Get precursor sequence
|
Structure | 10 20 30 40 50
GGGGAAGAUGUGUCUUUG- C - UC -| UAGAA
GGAAA C GCU CAUCAUU CCGGGCGGUAUUGGG \
CCUUU G CGA GUAGUAA GGUCCGUCAUAAUCU A
CCUCACGUACUACUGUUUA C U UA U^ UAGCU
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Ebu-Mir-8-P1o1_5p* |
mirBase accession | None |
Sequence |
0- CAUCAUUCCGGGCGGUAUUGGG -22
Get sequence
|
Mature sequence |
Ebu-Mir-8-P1o1_3p |
mirBase accession | None |
Sequence |
35- UAAUACUGCCUGGUAAUGAUGAU -58
Get sequence
|