MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-8-P15

Family name MIR-8 (all species)
Seed AAUACUG
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-8b
Paralogues Sme-Mir-8-P14 
Orthologues Aae-Mir-8  Aga-Mir-8  Agr-Mir-8  Asu-Mir-8  Bge-Mir-8  Bko-Mir-8  Bpl-Mir-8  Cbr-Mir-8  Cel-Mir-8  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dgr-Mir-8  Dlo-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dpu-Mir-8  Dsi-Mir-8  Dya-Mir-8  Eba-Mir-8  Egr-Mir-8  Esc-Mir-8  Gpa-Mir-8  Gsa-Mir-8  Hme-Mir-8  Hru-Mir-8  Isc-Mir-8  Lan-Mir-8  Lgi-Mir-8  Lhy-Mir-8  Llo-Mir-8  Mgi-Mir-8  Mom-Mir-8  Npo-Mir-8  Obi-Mir-8  Ofu-Mir-8  Ovu-Mir-8  Pau-Mir-8  Pca-Mir-8  Pdu-Mir-8  Pfl-Mir-8  Pmi-Mir-8  Pve-Mir-8  Rph-Mir-8  Sko-Mir-8  Sma-Mir-8  Snu-Mir-8  Spu-Mir-8  Tca-Mir-8  Tur-Mir-8  War-Mir-8 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Nephrozoa
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000077_dd_Smes_g4_77: 1841779-1841834 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUGUUUUAUUGCAUUCAUUCUAAUAAUUUGCUUCUUACUUGAUGGUAAGAGACAGAUUUUUGUUUAAUACUGUCAGGUAAGAAUACUGACUAUUAGAAUUAUCUUCGAUUGUUUGU
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Structure
        10         20        30         40        50       
AUGUUUUAUUGCAUUCA-        A  UGC-|               AG   CAGA 
                  UUCUAAUA UU    UUCUUACUUGAUGGUA  AGA    U
                  AAGAUUAU AG    AAGAAUGGACUGUCAU  UUU    U
UGUUUGUUAGCUUCUAUU        C  UCAU^               AA   GUUU 
    110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Star sequence

Sme-Mir-8-P15_5p*
mirBase accessionMIMAT0012139
Sequence 
0- CUUCUUACUUGAUGGUAAGAGA -22
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Mature sequence

Sme-Mir-8-P15_3p
mirBase accessionMIMAT0011240
Sequence 
34- UAAUACUGUCAGGUAAGAAUAC -56
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