MirGeneDB 3.0
MirGeneDB ID

Sme-Mir-8-P14

Family name MIR-8 (all species)
Seed AAUACUG
Species Freshwater planarian (Schmidtea mediterranea)
MiRBase ID sme-mir-8a
Paralogues Sme-Mir-8-P15 
Orthologues Aae-Mir-8  Aga-Mir-8  Agr-Mir-8  Asu-Mir-8  Bge-Mir-8  Bko-Mir-8  Bpl-Mir-8  Cbr-Mir-8  Cel-Mir-8  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dgr-Mir-8  Dlo-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dpu-Mir-8  Dsi-Mir-8  Dya-Mir-8  Eba-Mir-8  Egr-Mir-8  Esc-Mir-8  Gpa-Mir-8  Gsa-Mir-8  Hme-Mir-8  Hru-Mir-8  Isc-Mir-8  Lan-Mir-8  Lgi-Mir-8  Lhy-Mir-8  Llo-Mir-8  Mgi-Mir-8  Mom-Mir-8  Npo-Mir-8  Obi-Mir-8  Ofu-Mir-8  Ovu-Mir-8  Pau-Mir-8  Pca-Mir-8  Pdu-Mir-8  Pfl-Mir-8  Pmi-Mir-8  Pve-Mir-8  Rph-Mir-8  Sko-Mir-8  Sma-Mir-8  Snu-Mir-8  Spu-Mir-8  Tca-Mir-8  Tur-Mir-8  War-Mir-8 
Node of Origin (locus) S. mediterranea
Node of Origin (family) Nephrozoa
Genome context
(Sme_GCA_002600895.1_ASM260089v1_alt)		 NNSW01000053_dd_Smes_g4_53: 2041048-2041111 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UACAACGAUAACAUAAACUGUUAACUAAUGACAUCGAAUCAGACAGUUUAAGACAGAAUUUAAUAAAAUCUAAUACUGUCAGGUAACGAUGCCAUUUUGCUAGCAUUAUCAUCGAAAUAUUACU
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Structure
        10         20         30         40        50        60 
UACAACGAUAACAUAAAC-     ACU-    A     A-|  A      UUA   CAGAAUU 
                   UGUUA    AAUG CAUCG  AUC GACAGU   AGA       \
                   ACGAU    UUAC GUAGC  UGG CUGUCA   UCU       U
UCAUUAUAAAGCUACUAUU     CGUU    C     AA^  A      UAA   AAAAUAA 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ag Ag Di Gf Ne Ph Se Se Se Se Se Se Se Se Se Se Se Wh Wh Wh
Star sequence

Sme-Mir-8-P14_5p*
mirBase accessionMIMAT0012099
Sequence 
0- ACAUCGAAUCAGACAGUUUAAGA -23
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Mature sequence

Sme-Mir-8-P14_3p
mirBase accessionMIMAT0003972
Sequence 
40- UAAUACUGUCAGGUAACGAUGCCA -64
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