Mir-8-P13

MirGeneDB ID

Lpo-Mir-8-P13

Family name

MIR-8 (all species)

Seed

AAUACUG

Species

Atlantic horseshoe crab (Limulus polyphemus)

MiRBase ID

Paralogues

Lpo-Mir-8-P7 Lpo-Mir-8-P8 Lpo-Mir-8-P9 Lpo-Mir-8-P10 Lpo-Mir-8-P11 Lpo-Mir-8-P12

Orthologues

Aae-Mir-8 Aga-Mir-8 Agr-Mir-8 Asu-Mir-8 Bge-Mir-8 Bko-Mir-8 Bpl-Mir-8 Cbr-Mir-8 Cel-Mir-8 Csc-Mir-8 Cte-Mir-8 Dan-Mir-8 Dgr-Mir-8 Dlo-Mir-8 Dma-Mir-8 Dme-Mir-8 Dmo-Mir-8 Dpu-Mir-8 Dsi-Mir-8 Dya-Mir-8 Eba-Mir-8 Egr-Mir-8 Esc-Mir-8 Gpa-Mir-8 Gsa-Mir-8 Hme-Mir-8 Hru-Mir-8 Isc-Mir-8 Lan-Mir-8 Lgi-Mir-8 Lhy-Mir-8 Llo-Mir-8 Mgi-Mir-8 Mom-Mir-8 Npo-Mir-8 Obi-Mir-8 Ofu-Mir-8 Ovu-Mir-8 Pau-Mir-8 Pca-Mir-8 Pdu-Mir-8 Pfl-Mir-8 Pmi-Mir-8 Pve-Mir-8 Rph-Mir-8 Sko-Mir-8 Sma-Mir-8 Snu-Mir-8 Spu-Mir-8 Tca-Mir-8 Tur-Mir-8 War-Mir-8

Node of Origin (locus)

L. polyphemus

Node of Origin (family)

Nephrozoa

Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)

NW_013667745.1: 190141-190203 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AUUAAGACUUUAGUGAUAAGUUCUCGGGUGCAUCUUACCAGGCAGAUUUAGAGUGAAAUCUCGAAACGUCUAAUACUGUCAGGUAAAGAUGUUCACGAGGUCUGUGAACGCAGCAUUGUGAAA

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Structure

        10          20        30         40        50        60
AUUAAGACUUUAGUGAUA--  UU    GGU     -|    A     AU     GUGAAAU 
                    AG  CUCG   GCAUC UUACC GGCAG  UUAGA       C
                    UC  GAGC   UGUAG AAUGG CUGUC  AAUCU       U
AAAGUGUUACGACGCAAGUG  UG    ACU     A^    A     AU     GCAAAGC 
 120       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Ge	Ge	So	So	So	To

Star sequence

Lpo-Mir-8-P13_5p* (predicted)

mirBase accession

None

Sequence

0- CAUCUUACCAGGCAGAUUUAGA -22

Get sequence

Mature sequence

Lpo-Mir-8-P13_3p

mirBase accession

None

Sequence

40- UAAUACUGUCAGGUAAAGAUGUU -63

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