MirGeneDB 2.1

MirGeneDB ID

Lpo-Mir-8-P11

Family name MIR-8 (all species)
Seed AAUACUG
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-8-P7  Lpo-Mir-8-P8  Lpo-Mir-8-P9  Lpo-Mir-8-P10  Lpo-Mir-8-P12  Lpo-Mir-8-P13 
Orthologues Aae-Mir-8  Asu-Mir-8  Bge-Mir-8  Bpl-Mir-8  Cbr-Mir-8  Cel-Mir-8  Cgi-Mir-8  Csc-Mir-8  Cte-Mir-8  Dan-Mir-8  Dma-Mir-8  Dme-Mir-8  Dmo-Mir-8  Dpu-Mir-8  Dsi-Mir-8  Dya-Mir-8  Esc-Mir-8  Hme-Mir-8  Isc-Mir-8  Lan-Mir-8  Lgi-Mir-8  Npo-Mir-8  Obi-Mir-8  Ovu-Mir-8  Pfl-Mir-8  Pmi-Mir-8  Sko-Mir-8  Spu-Mir-8  Tca-Mir-8 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Bilateria
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)
NW_013673281.1: 27752-27815 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
ACUUCAGAUGGCUAGAAAAAGCUCUGACUUCAUCUUACCGGGCAGGAUUAGAGUUCUUUACCAAUAUCUUCUAAUACUGUCAGGUAAAGAUGUGUACGGAGCUUUCCAGGGCAGCGACACGGAG
Get precursor sequence
Structure
        10          20         30         40        50        60 
ACUUCAGAUGGCUAGAA--         -| UU      -   G     G      GUUCUUUA 
                   AAAGCUCUG AC  CAUCUU ACC GGCAG AUUAGA        \
                   UUUCGAGGC UG  GUAGAA UGG CUGUC UAAUCU        C
GAGGCACAGCGACGGGACC         A^ U-      A   A     A      UCUAUAAC 
  120       110       100         90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Fe Fe Fe Ma Ma To
Star sequence

Lpo-Mir-8-P11_5p*

mirBase accessionNone
Sequence
0- CAUCUUACCGGGCAGGAUUAGA -22
Get sequence
Mature sequence

Lpo-Mir-8-P11_3p

mirBase accessionNone
Sequence
41- UAAUACUGUCAGGUAAAGAUGUG -64
Get sequence