MirGeneDB ID | Efe-Mir-8-P4 |
Family name |
MIR-8 (all species) |
Seed |
AAUACUG |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
Efe-Mir-8-P5
Efe-Mir-8-P6
|
Orthologues |
Aae-Mir-8
Asu-Mir-8
Bge-Mir-8
Bpl-Mir-8
Cbr-Mir-8
Cel-Mir-8
Cgi-Mir-8
Csc-Mir-8
Cte-Mir-8
Dan-Mir-8
Dma-Mir-8
Dme-Mir-8
Dmo-Mir-8
Dpu-Mir-8
Dsi-Mir-8
Dya-Mir-8
Esc-Mir-8
Hme-Mir-8
Isc-Mir-8
Lan-Mir-8
Lgi-Mir-8
Npo-Mir-8
Obi-Mir-8
Ovu-Mir-8
Pfl-Mir-8
Pmi-Mir-8
Sko-Mir-8
Spu-Mir-8
Tca-Mir-8
|
Node of Origin (locus) |
E. fetida
|
Node of Origin (family) |
Bilateria
|
Genome context (Efe_combined) |
Efet.01.118063: 3502-3564 [-]
|
Precursor (pre-Mir +30nt flank) |
ACCUGCAUACGGCCGGCAUAUCUUUGAUGCCGUCUUACCUGGUAGUCUUAGGUGUCGCGUUUGUUAUGCCUAAUACUGUCAGGUAAAGAUGUCAGCUGGAUGUGCCUUCGUCAUACUUAAUAG
Get precursor sequence
|
Structure | 10 20 30 40 50 60
ACCUGCAUACGGCCGGC---| UUGA C - GU C UGUCGCG
AUAUCU UG CGUCUU ACCUG AGU UUAGG U
UGUAGG AC GUAGAA UGGAC UCA AAUCC U
GAUAAUUCAUACUGCUUCCG^ UCG- U A UG U GUAUUGU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Efe-Mir-8-P4_5p* |
mirBase accession | None |
Sequence |
0- CGUCUUACCUGGUAGUCUUAGG -22
Get sequence
|
Mature sequence |
Efe-Mir-8-P4_3p |
mirBase accession | None |
Sequence |
40- UAAUACUGUCAGGUAAAGAUGUC -63
Get sequence
|