| MirGeneDB ID | Rph-Mir-87-o19 |
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| Family name |
MIR-87 (all species) |
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| Seed |
UGAGCAA |
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| Species |
Japanese carpet shell (Ruditapes philippinarum) |
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| MiRBase ID |
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| Paralogues |
Rph-Mir-87-o20
Rph-Mir-87-o21
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| Orthologues |
Gsp-Mir-87
Sne-Mir-87
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| Node of Origin (locus) |
R. philippinarum
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| Node of Origin (family) |
Protostomia
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Genome context
(Ruditapes_GCA_009026015) |
CM018532.1: 24178980-24179040 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GGCACAUUUGGCUGGAAGUCAUGAGUGUGGUGUGCCUGUUAUUUUGUCUCAAGCCUGUGUAAUUUCUAGGUGAGCAAAGUUUCAGGUGUCACACUUGUGAUGAUUUACAUCUGGAGAUGAA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GGCACAUUUGGCUGGAA---| UG GU UG UU U AGCCUGUGU
GUCA AGUGUG G CCUG AUUUUG CUCA \
UAGU UCACAC U GGAC UGAAAC GAGU A
AAGUAGAGGUCUACAUUUAG^ GU -- GU UU - GGAUCUUUA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
|
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
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| Star sequence |
Rph-Mir-87-o19_5p* |
| mirBase accession | None |
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| Sequence |
0- UGUGCCUGUUAUUUUGUCUCAAGC -24
Get sequence
|
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| Mature sequence |
Rph-Mir-87-o19_3p |
| mirBase accession | None |
|---|
| Sequence |
39- GUGAGCAAAGUUUCAGGUGUCA -61
Get sequence
|
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