MirGeneDB 3.0

MirGeneDB ID

Rph-Mir-87-o21

Family name MIR-87 (all species)
Seed UGAGCAA
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues Rph-Mir-87-o19  Rph-Mir-87-o20 
Orthologues Gsp-Mir-87  Sne-Mir-87 
Node of Origin (locus) R. philippinarum
Node of Origin (family) Protostomia
Genome context
(Ruditapes_GCA_009026015)
CM018532.1: 24177000-24177060 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
GAGGAGAAGUUGCAAUGAGGUUGUGUGGAUGCGCUUGAAUCUUUAGCUCAGACCUUGGUUUUGUAAGAGGUGAGCAAAGUUUCAAGUGUGUCUGUAUGCCUUAAAACAUCAGAUUGGCGGA
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Structure
        10           20        30        40        50        60 
GAGGAGAAGUUGCAAUG---|   U   UG            U    A    AG    UGGUU 
                    AGGU GUG  GAUGCGCUUGAA CUUU GCUC  ACCU     U
                    UCCG UAU  CUGUGUGAACUU GAAA CGAG  UGGA     U
AGGCGGUUAGACUACAAAAU^   -   GU            U    -    --    GAAUG 
 .       110       100         90        80           70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Star sequence

Rph-Mir-87-o21_5p*

mirBase accessionNone
Sequence
0- GCGCUUGAAUCUUUAGCUCAGACCU -25
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Mature sequence

Rph-Mir-87-o21_3p

mirBase accessionNone
Sequence
39- GUGAGCAAAGUUUCAAGUGUGU -61
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