MirGeneDB ID | Rph-Mir-87-o20 |
Family name |
MIR-87 (all species) |
Seed |
UGAGCAA |
Species |
Japanese carpet shell (Ruditapes philippinarum) |
MiRBase ID |
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Paralogues |
Rph-Mir-87-o19
Rph-Mir-87-o21
|
Orthologues |
Gsp-Mir-87
Sne-Mir-87
|
Node of Origin (locus) |
R. philippinarum
|
Node of Origin (family) |
Protostomia
|
Genome context (Ruditapes_GCA_009026015) |
CM018532.1: 24178272-24178331 [-]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUGGUUGUUUGAAUAAAGUCUAUCAAGGCUGAGCCUAAGAUUUUGUCUCAAGCCUGAGAAUAAGCAGGUGAGCAAAGUUUCAGGUGUCGGCUUUGUUGACUACAGCAACAUGUCCUAAGA
Get precursor sequence
|
Structure | 10 20 30 40 50
UUGGUUGUUUGAAUAAA---| UAU - A U AGCCUGAG
GUC CAAGGCUGA GCCU AGAUUUUG CUCA A
CAG GUUUCGGCU UGGA UUUGAAAC GAGU A
AGAAUCCUGUACAACGACAU^ UU- G C - GGACGAAU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
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Star sequence |
Rph-Mir-87-o20_5p* (predicted) |
mirBase accession | None |
Sequence |
0- GAGCCUAAGAUUUUGUCUCAAGC -23
Get sequence
|
Mature sequence |
Rph-Mir-87-o20_3p |
mirBase accession | None |
Sequence |
37- GUGAGCAAAGUUUCAGGUGUCGG -60
Get sequence
|