| MirGeneDB ID | Rph-Mir-87-o20 |
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| Family name |
MIR-87 (all species) |
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| Seed |
UGAGCAA |
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| Species |
Japanese carpet shell (Ruditapes philippinarum) |
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| MiRBase ID |
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| Paralogues |
Rph-Mir-87-o19
Rph-Mir-87-o21
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| Orthologues |
Gsp-Mir-87
Sne-Mir-87
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| Node of Origin (locus) |
R. philippinarum
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| Node of Origin (family) |
Protostomia
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Genome context
(Ruditapes_GCA_009026015) |
CM018532.1: 24178272-24178331 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
UUGGUUGUUUGAAUAAAGUCUAUCAAGGCUGAGCCUAAGAUUUUGUCUCAAGCCUGAGAAUAAGCAGGUGAGCAAAGUUUCAGGUGUCGGCUUUGUUGACUACAGCAACAUGUCCUAAGA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
UUGGUUGUUUGAAUAAA---| UAU - A U AGCCUGAG
GUC CAAGGCUGA GCCU AGAUUUUG CUCA A
CAG GUUUCGGCU UGGA UUUGAAAC GAGU A
AGAAUCCUGUACAACGACAU^ UU- G C - GGACGAAU
. 110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
|
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
Sr |
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| Star sequence |
Rph-Mir-87-o20_5p* (predicted) |
| mirBase accession | None |
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| Sequence |
0- GAGCCUAAGAUUUUGUCUCAAGC -23
Get sequence
|
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| Mature sequence |
Rph-Mir-87-o20_3p |
| mirBase accession | None |
|---|
| Sequence |
37- GUGAGCAAAGUUUCAGGUGUCGG -60
Get sequence
|
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