MirGeneDB 3.0

MirGeneDB ID

Rph-Mir-87-o20

Family name MIR-87 (all species)
Seed UGAGCAA
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues Rph-Mir-87-o19  Rph-Mir-87-o21 
Orthologues Gsp-Mir-87  Sne-Mir-87 
Node of Origin (locus) R. philippinarum
Node of Origin (family) Protostomia
Genome context
(Ruditapes_GCA_009026015)
CM018532.1: 24178272-24178331 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UUGGUUGUUUGAAUAAAGUCUAUCAAGGCUGAGCCUAAGAUUUUGUCUCAAGCCUGAGAAUAAGCAGGUGAGCAAAGUUUCAGGUGUCGGCUUUGUUGACUACAGCAACAUGUCCUAAGA
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Structure
        10           20        30         40        50         
UUGGUUGUUUGAAUAAA---|  UAU         -    A        U    AGCCUGAG 
                    GUC   CAAGGCUGA GCCU AGAUUUUG CUCA        A
                    CAG   GUUUCGGCU UGGA UUUGAAAC GAGU        A
AGAAUCCUGUACAACGACAU^  UU-         G    C        -    GGACGAAU 
.       110       100         90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Star sequence

Rph-Mir-87-o20_5p* (predicted)

mirBase accessionNone
Sequence
0- GAGCCUAAGAUUUUGUCUCAAGC -23
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Mature sequence

Rph-Mir-87-o20_3p

mirBase accessionNone
Sequence
37- GUGAGCAAAGUUUCAGGUGUCGG -60
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