| MirGeneDB ID | Rph-Novel-2 |
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| Family name |
RPH-NOVEL-2 (all species) |
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| Seed |
CGGGACA |
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| Species |
Japanese carpet shell (Ruditapes philippinarum) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
R. philippinarum
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| Node of Origin (family) |
R. philippinarum
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Genome context
(Ruditapes_GCA_009026015) |
CM018529.1: 4830419-4830479 [+]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
GCAGUUGAAGAAAAGAUUUGACUGACCGCUCGGGAAUUGGCCAGGUCCGAGAGAUAGAAUUAUAAUAACUCGGGACAUUGUCAAUUCCAUGUGGUUUUUCAUAACUCAUCAUUGAUCAUCA
Get precursor sequence
|
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| Structure | 10 20 30 40 50 60
GCAGUUGAAGAAAAGAUU--| CU UCG CAG GA AUAGAAU
UGA GACCGC GGAAUUGGC GUCC GAG \
ACU UUGGUG CCUUAACUG CAGG CUC U
ACUACUAGUUACUACUCAAU^ UU UA- UUA G- AAUAAUA
. 110 100 90 80 70 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
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| Star sequence |
Rph-Novel-2_5p* |
| mirBase accession | None |
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| Sequence |
0- CGGGAAUUGGCCAGGUCCGAGAGA -24
Get sequence
|
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| Mature sequence |
Rph-Novel-2_3p |
| mirBase accession | None |
|---|
| Sequence |
39- UCGGGACAUUGUCAAUUCCAUG -61
Get sequence
|
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