| MirGeneDB ID | Rph-Novel-2 |
|---|---|
| Family name | RPH-NOVEL-2 (all species) |
| Seed | CGGGACA |
| Species | Japanese carpet shell (Ruditapes philippinarum) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | |
| Node of Origin (locus) | R. philippinarum |
| Node of Origin (family) | R. philippinarum |
| Genome context (Ruditapes_GCA_009026015) |
CM018529.1: 4830419-4830479 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | GCAGUUGAAGAAAAGAUUUGACUGACCGCUCGGGAAUUGGCCAGGUCCGAGAGAUAGAAUUAUAAUAACUCGGGACAUUGUCAAUUCCAUGUGGUUUUUCAUAACUCAUCAUUGAUCAUCAGet precursor sequence |
| Structure | 10 20 30 40 50 60 GCAGUUGAAGAAAAGAUU--| CU UCG CAG GA AUAGAAU UGA GACCGC GGAAUUGGC GUCC GAG \ ACU UUGGUG CCUUAACUG CAGG CUC U ACUACUAGUUACUACUCAAU^ UU UA- UUA G- AAUAAUA . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | CNNC at 3p(+17) |
| Star sequence | Rph-Novel-2_5p* |
| mirBase accession | None |
| Sequence |
0- CGGGAAUUGGCCAGGUCCGAGAGA -24
Get sequence
|
| Mature sequence | Rph-Novel-2_3p |
| mirBase accession | None |
| Sequence |
39- UCGGGACAUUGUCAAUUCCAUG -61
Get sequence
|
