| MirGeneDB ID | Rph-Novel-5 |
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| Family name |
RPH-NOVEL-5 (all species) |
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| Seed |
UAGGCCA |
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| Species |
Japanese carpet shell (Ruditapes philippinarum) |
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| MiRBase ID |
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| Paralogues |
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| Orthologues |
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| Node of Origin (locus) |
R. philippinarum
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| Node of Origin (family) |
R. philippinarum
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Genome context
(Ruditapes_GCA_009026015) |
CM018529.1: 36733602-36733658 [-]
Ensembl
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Precursor
(pre-Mir +30nt flank) |
CCGUGGAUGAGCAGAUGAGAUUUGACGGGACGGAAGAAACCUUCGUCUAGAGUGAUAAUAUACAUCUAGGCCAGGAUUACUUCCGUUCUGACAAAUCUACAAAACAACCUUCCUGCA
Get precursor sequence
|
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| Structure | 10 20 30 40 50
CCGUGGAUGAGCAGAUG-- A -| A UC GUGAUA
AGAUUUG CGGGACGGAAG AA CCU GUCUAGA \
UCUAAAC GUCUUGCCUUC UU GGA CGGAUCU A
ACGUCCUUCCAACAAAACA A A^ A C- ACAUAU
110 100 90 80 70 60 |
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| Deep sequencing |
Go to detailed chart
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| 3' NTU |
No
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| Motifs | CNNC at 3p(+17) |
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Tissue expression
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| Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
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| Star sequence |
Rph-Novel-5_5p* |
| mirBase accession | None |
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| Sequence |
0- CGGAAGAAACCUUCGUCUAGAGU -23
Get sequence
|
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| Mature sequence |
Rph-Novel-5_3p |
| mirBase accession | None |
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| Sequence |
35- CUAGGCCAGGAUUACUUCCGUU -57
Get sequence
|
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