MirGeneDB ID | Rph-Mir-33-P16 |
Family name |
MIR-33 (all species) |
Seed |
AAUGUUC |
Species |
Japanese carpet shell (Ruditapes philippinarum) |
MiRBase ID |
|
Paralogues |
Rph-Mir-33-P15
|
Orthologues |
Aae-Mir-33
Aga-Mir-33
Ava-Mir-33
Bge-Mir-33
Cin-Mir-33
Csc-Mir-33
Cte-Mir-33
Dan-Mir-33
Dgr-Mir-33
Dlo-Mir-33
Dma-Mir-33
Dme-Mir-33
Dmo-Mir-33
Dpu-Mir-33
Dsi-Mir-33
Dya-Mir-33
Eba-Mir-33
Ebu-Mir-33
Efe-Mir-33
Egr-Mir-33
Esc-Mir-33
Gpa-Mir-33
Gsp-Mir-33
Hru-Mir-33
Isc-Mir-33
Lgi-Mir-33
Llo-Mir-33
Mgi-Mir-33
Mom-Mir-33
Npo-Mir-33
Obi-Mir-33
Ofu-Mir-33
Ovu-Mir-33
Pau-Mir-33
Pca-Mir-33
Pcr-Mir-33
Pdu-Mir-33
Pfl-Mir-33
Pmi-Mir-33
Sko-Mir-33
Snu-Mir-33
Spu-Mir-33
Tca-Mir-33
War-Mir-33
Xbo-Mir-33
|
Node of Origin (locus) |
R. philippinarum
|
Node of Origin (family) |
Bilateria
|
Genome context (Ruditapes_GCA_009026015) |
CM018523.1: 7585243-7585300 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGUUACUACAGGGAUGGACUUACUCUGGUUGUGCAUUGUAGUUGCAUUGCAUGUCCUUCACACUGUGCAAUGUUCCUGCAGUGCAAUAACUGGGCUUGUCAUAGCAGCAAACAAAUCU
Get precursor sequence
|
Structure | 10 20 30 40 50
GGUUACUACAGGGAUGGACUUAC- UG -| UU UGUCCU
UC GUUG UGCAUUGUAG GCAUUGCA U
GG CAAU ACGUGACGUC UGUAACGU C
UCUAAACAAACGACGAUACUGUUC GU A^ CU GUCACA
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | The 3p arm appears to be monoadenylated. |
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
Ru |
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Star sequence |
Rph-Mir-33-P16_5p* |
mirBase accession | None |
Sequence |
0- GUGCAUUGUAGUUGCAUUGCA -21
Get sequence
|
Mature sequence |
Rph-Mir-33-P16_3p |
mirBase accession | None |
Sequence |
37- CAAUGUUCCUGCAGUGCAAUA -58
Get sequence
|