MirGeneDB 3.0

MirGeneDB ID

Lgi-Mir-33

Family name

MIR-33 (all species)

Seed

Species

Owl limpet (Lottia gigantea)

MiRBase ID

lgi-mir-33

Paralogues

Orthologues

Aae-Mir-33 Aca-Mir-33-P1 Aca-Mir-33-P3 Aga-Mir-33 Ami-Mir-33-P1 Ami-Mir-33-P3 Ava-Mir-33 Bfl-Mir-33-P6 Bfl-Mir-33-P7 Bge-Mir-33 Bla-Mir-33-P6 Bla-Mir-33-P7 Bta-Mir-33-P1 Bta-Mir-33-P3 Cfa-Mir-33-P1 Cfa-Mir-33-P3 Cin-Mir-33 Cja-Mir-33-P1 Cja-Mir-33-P3 Cli-Mir-33-P1 Cli-Mir-33-P3 Cmi-Mir-33-P1 Cmi-Mir-33-P3 Cpi-Mir-33-P1 Cpi-Mir-33-P3 Cpo-Mir-33-P1 Cpo-Mir-33-P3 Csc-Mir-33 Cte-Mir-33 Dan-Mir-33 Dgr-Mir-33 Dlo-Mir-33 Dma-Mir-33 Dme-Mir-33 Dmo-Mir-33 Dno-Mir-33-P1 Dno-Mir-33-P3 Dpu-Mir-33 Dre-Mir-33-P1a Dsi-Mir-33 Dya-Mir-33 Eba-Mir-33 Ebu-Mir-33 Eca-Mir-33-P1 Eca-Mir-33-P3 Efe-Mir-33 Egr-Mir-33 Esc-Mir-33 Ete-Mir-33-P1 Ete-Mir-33-P3 Gga-Mir-33-P1 Gga-Mir-33-P3 Gja-Mir-33-P1 Gja-Mir-33-P3 Gmo-Mir-33-P1a Gmo-Mir-33-P1b Gpa-Mir-33 Gsp-Mir-33 Hme-Mir-33-P8 Hme-Mir-33-P9 Hru-Mir-33 Hsa-Mir-33-P1 Hsa-Mir-33-P3 Isc-Mir-33 Laf-Mir-33-P1 Laf-Mir-33-P3 Lan-Mir-33-P10 Lan-Mir-33-P11 Lch-Mir-33-P1 Lch-Mir-33-P3 Llo-Mir-33 Loc-Mir-33-P1 Loc-Mir-33-P3 Lpo-Mir-33-P12 Lpo-Mir-33-P13 Lpo-Mir-33-P14 Mal-Mir-33-P1a Mal-Mir-33-P1b Mal-Mir-33-P3 Mdo-Mir-33-P3 Mgi-Mir-33 Mml-Mir-33-P1 Mml-Mir-33-P3 Mmr-Mir-33-P1 Mmr-Mir-33-P3 Mmu-Mir-33-P3 Mom-Mir-33 Mun-Mir-33-P1 Mun-Mir-33-P3 Neu-Mir-33-P3 Npo-Mir-33 Oan-Mir-33-P1 Oan-Mir-33-P3 Obi-Mir-33 Ocu-Mir-33-P1 Ocu-Mir-33-P3 Ofu-Mir-33 Ovu-Mir-33 Pab-Mir-33-P1 Pab-Mir-33-P3 Pau-Mir-33 Pbv-Mir-33-P1 Pbv-Mir-33-P3 Pca-Mir-33 Pcr-Mir-33 Pdu-Mir-33 Pfl-Mir-33 Pma-Mir-33-o1 Pma-Mir-33-o2 Pma-Mir-33-o3 Pmi-Mir-33 Pve-Mir-33-P17a Pve-Mir-33-P17b Rno-Mir-33-P3 Rph-Mir-33-P15 Rph-Mir-33-P16 Sha-Mir-33-P3 Sko-Mir-33 Snu-Mir-33 Spt-Mir-33-P1 Spt-Mir-33-P3 Spu-Mir-33 Sto-Mir-33-P1 Sto-Mir-33-P3 Tca-Mir-33 Tgu-Mir-33-P1 Tgu-Mir-33-P3 Tni-Mir-33-P1a Tni-Mir-33-P1b Tni-Mir-33-P3 War-Mir-33 Xbo-Mir-33 Xla-Mir-33-P1c Xla-Mir-33-P1d Xla-Mir-33-P3a Xla-Mir-33-P3b Xtr-Mir-33-P1 Xtr-Mir-33-P3

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Lotgi1)

LOTGIsca_111: 788865-788923 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

GAAACGAGACCGAACUAAGCAGUUGUGAUGGUGCAUUGUAGUUGCAUUGCAUUUGUUAUAAAUUAUGCAAUGCAUCUGCAGUGCAAACAUUACGAUUGAAACUAUCACCUAUACAGUCA

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Structure

        10          20        30         40        50        
GAAACGAGACCGAACUAAG--           G-|         U         UUUGUU 
                     CAGUUGUGAUG  UGCAUUGUAG UGCAUUGCA      A
                     GUUAGCAUUAC  ACGUGACGUC ACGUAACGU      U
ACUGACAUAUCCACUAUCAAA           AA^         U         AUUAAA 
       110       100        90        80        70        60

Deep sequencing

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3' NTU

Unknown

Motifs

CNNC at 3p(+17)

Tissue expression

-

+

To

Mature sequence

Lgi-Mir-33_5p

mirBase accession

Sequence

0- GUGCAUUGUAGUUGCAUUGCA -21

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Star sequence

Lgi-Mir-33_3p* (predicted)

mirBase accession

Sequence

37- CAAUGCAUCUGCAGUGCAAACA -59

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