| MirGeneDB ID | Lch-Mir-33-P3 |
|---|---|
| Family name | MIR-33 (all species) |
| Seed | UGCAUUG |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-33-P1 |
| Orthologues | Aae-Mir-33 Aca-Mir-33-P3 Ami-Mir-33-P3 Bge-Mir-33 Bta-Mir-33-P3 Cfa-Mir-33-P3 Cgi-Mir-33 Cin-Mir-33 Cli-Mir-33-P3 Cmi-Mir-33-P3 Cpi-Mir-33-P3 Cpo-Mir-33-P3 Csc-Mir-33 Cte-Mir-33 Dan-Mir-33 Dma-Mir-33 Dme-Mir-33 Dmo-Mir-33 Dno-Mir-33-P3 Dpu-Mir-33 Dsi-Mir-33 Dya-Mir-33 Ebu-Mir-33 Efe-Mir-33 Esc-Mir-33 Ete-Mir-33-P3 Gga-Mir-33-P3 Gja-Mir-33-P3 Hsa-Mir-33-P3 Isc-Mir-33 Lgi-Mir-33 Loc-Mir-33-P3 Mal-Mir-33-P3 Mdo-Mir-33-P3 Mml-Mir-33-P3 Mmu-Mir-33-P3 Mun-Mir-33-P3 Npo-Mir-33 Oan-Mir-33-P3 Obi-Mir-33 Ocu-Mir-33-P3 Ovu-Mir-33 Pbv-Mir-33-P3 Pfl-Mir-33 Pma-Mir-33-o3 Pmi-Mir-33 Rno-Mir-33-P3 Sha-Mir-33-P3 Sko-Mir-33 Spt-Mir-33-P3 Spu-Mir-33 Sto-Mir-33-P3 Tca-Mir-33 Tgu-Mir-33-P3 Tni-Mir-33-P3 Xbo-Mir-33 Xla-Mir-33-P3a Xla-Mir-33-P3b Xtr-Mir-33-P3 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Bilateria |
| Genome context (LatCha1_add) |
JH129755.1: 152934-152994 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | CGGGCUGCCACGCUCCUGGAGACAGCUGUGGUGCAUUGUAGUUGCAUUGCAUGUUGGAGCUGCAAGUGUGCAAUGUGUCUGCAGUGCAGUACAGAGAAUCUCCGAUCUCAUCCACGGGGACGet precursor sequence |
| Structure | 10 20 30 40 50 CGGGCUGCCACGCUCCU- CAG-| G U UGUUGGAG GGAGA CUGUG UGCAUUGUAG UGCAUUGCA \ CCUCU GACAU ACGUGACGUC GUGUAACGU C CAGGGGCACCUACUCUAG AAGA^ G U GUGAACGU . 110 100 90 80 70 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Lch-Mir-33-P3_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- GUGCAUUGUAGUUGCAUUGCA -21
Get sequence
|
| Star sequence | Lch-Mir-33-P3_3p* (predicted) |
| mirBase accession | None |
| Sequence |
40- CAAUGUGUCUGCAGUGCAGUA -61
Get sequence
|
