MirGeneDB ID | Xla-Mir-33-P3a |
Family name |
MIR-33 (all species) |
Seed |
UGCAUUG |
Species |
African clawed frog (Xenopus laevis) |
MiRBase ID |
xla-mir-33b
|
Paralogues |
Xla-Mir-33-P1c
Xla-Mir-33-P1d
Xla-Mir-33-P3b
|
Orthologues |
Aae-Mir-33
Aca-Mir-33-P3
Ami-Mir-33-P3
Bge-Mir-33
Bta-Mir-33-P3
Cfa-Mir-33-P3
Cgi-Mir-33
Cin-Mir-33
Cli-Mir-33-P3
Cmi-Mir-33-P3
Cpi-Mir-33-P3
Cpo-Mir-33-P3
Csc-Mir-33
Cte-Mir-33
Dan-Mir-33
Dma-Mir-33
Dme-Mir-33
Dmo-Mir-33
Dno-Mir-33-P3
Dpu-Mir-33
Dsi-Mir-33
Dya-Mir-33
Ebu-Mir-33
Efe-Mir-33
Esc-Mir-33
Ete-Mir-33-P3
Gga-Mir-33-P3
Gja-Mir-33-P3
Hsa-Mir-33-P3
Isc-Mir-33
Lch-Mir-33-P3
Lgi-Mir-33
Loc-Mir-33-P3
Mal-Mir-33-P3
Mdo-Mir-33-P3
Mml-Mir-33-P3
Mmu-Mir-33-P3
Mun-Mir-33-P3
Npo-Mir-33
Oan-Mir-33-P3
Obi-Mir-33
Ocu-Mir-33-P3
Ovu-Mir-33
Pbv-Mir-33-P3
Pfl-Mir-33
Pma-Mir-33-o3
Pmi-Mir-33
Rno-Mir-33-P3
Sha-Mir-33-P3
Sko-Mir-33
Spt-Mir-33-P3
Spu-Mir-33
Sto-Mir-33-P3
Tca-Mir-33
Tgu-Mir-33-P3
Tni-Mir-33-P3
Xbo-Mir-33
Xtr-Mir-33-P3
|
Node of Origin (locus) |
X. laevis
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_001663975.1_XLA_v2) |
NC_030730.1: 112596721-112596781 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUUCAUUGAUAUAAUGUUGGUAUCACCCUGGUGCAUUGUUGUUGCAUUGCAUGUCACCUUGAACUUUGUGCAAUGUUUCUUCAGUGCAGUAUGGUGGUUCCAGCUGUCUUCAUAUCUGGCU
Get precursor sequence
|
Structure | 10 20 30 40 50
AUUCAUUGAUAUAAUGU--| U C G UUGUU UGUCACCU
UGG AUCACC UG UGCAUUG GCAUUGCA \
ACC UGGUGG AU ACGUGAC UGUAACGU U
UCGGUCUAUACUUCUGUCG^ U U G UUCUU GUUUCAAG
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
Comment | Although templated, the 3' NTU is likely a monourydilation given phylogenetic conservation with other taxa. |
3' NTU |
Yes
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Xla-Mir-33-P3a_5p |
mirBase accession | MIMAT0046582 |
Sequence |
0- GUGCAUUGUUGUUGCAUUGCA -21
Get sequence
|
Co-mature sequence |
Xla-Mir-33-P3a_3p |
mirBase accession | MIMAT0046583 |
Sequence |
40- CAAUGUUUCUUCAGUGCAGUA -61
Get sequence
|