MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-33-P3

Family name MIR-33 (all species)
Seed UGCAUUG
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-33-1
Paralogues Ami-Mir-33-P1 
Orthologues Aae-Mir-33  Aca-Mir-33-P3  Aga-Mir-33  Ava-Mir-33  Bge-Mir-33  Bta-Mir-33-P3  Cfa-Mir-33-P3  Cin-Mir-33  Cja-Mir-33-P3  Cli-Mir-33-P3  Cmi-Mir-33-P3  Cpi-Mir-33-P3  Cpo-Mir-33-P3  Csc-Mir-33  Cte-Mir-33  Dan-Mir-33  Dgr-Mir-33  Dlo-Mir-33  Dma-Mir-33  Dme-Mir-33  Dmo-Mir-33  Dno-Mir-33-P3  Dpu-Mir-33  Dsi-Mir-33  Dya-Mir-33  Eba-Mir-33  Ebu-Mir-33  Eca-Mir-33-P3  Efe-Mir-33  Egr-Mir-33  Esc-Mir-33  Ete-Mir-33-P3  Gga-Mir-33-P3  Gja-Mir-33-P3  Gpa-Mir-33  Gsp-Mir-33  Hru-Mir-33  Hsa-Mir-33-P3  Isc-Mir-33  Laf-Mir-33-P3  Lch-Mir-33-P3  Lgi-Mir-33  Llo-Mir-33  Loc-Mir-33-P3  Mal-Mir-33-P3  Mdo-Mir-33-P3  Mgi-Mir-33  Mml-Mir-33-P3  Mmr-Mir-33-P3  Mmu-Mir-33-P3  Mom-Mir-33  Mun-Mir-33-P3  Neu-Mir-33-P3  Npo-Mir-33  Oan-Mir-33-P3  Obi-Mir-33  Ocu-Mir-33-P3  Ofu-Mir-33  Ovu-Mir-33  Pab-Mir-33-P3  Pau-Mir-33  Pbv-Mir-33-P3  Pca-Mir-33  Pcr-Mir-33  Pdu-Mir-33  Pfl-Mir-33  Pma-Mir-33-o3  Pmi-Mir-33  Rno-Mir-33-P3  Sha-Mir-33-P3  Sko-Mir-33  Snu-Mir-33  Spt-Mir-33-P3  Spu-Mir-33  Sto-Mir-33-P3  Tca-Mir-33  Tgu-Mir-33-P3  Tni-Mir-33-P3  War-Mir-33  Xbo-Mir-33  Xla-Mir-33-P3a  Xla-Mir-33-P3b  Xtr-Mir-33-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017710370.1: 945279-945339 [-] UCSC
Precursor
(pre-Mir +30nt flank)
UCCCUCUGUUACUCCUGGGUGACCGCUGUAGUGCAUUGUAGUUGCAUUGCAUGUUCUGGUAGUAUCUGUGCAAUGUUUCUGCAGUGCAGUAUAGAGGCACUCUUCACGUCUGCAGUGCAGG
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Structure
        10           20        30        40        50          
UCCCUCUGUUACUCCUG---|   A  G     G          UU        UGUUCUGG 
                    GGUG CC CUGUA UGCAUUGUAG  GCAUUGCA        \
                    UCAC GG GAUAU ACGUGACGUC  UGUAACGU        U
GGACGUGACGUCUGCACUUC^   -  A     G          UU        GUCUAUGA 
 .       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Ami-Mir-33-P3_5p
mirBase accessionMIMAT0038092
Sequence 
0- GUGCAUUGUAGUUGCAUUGCA -21
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Star sequence

Ami-Mir-33-P3_3p*
mirBase accessionMIMAT0038093
Sequence 
40- CAAUGUUUCUGCAGUGCAGUA -61
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