Mir-33-P3

MirGeneDB ID

Ocu-Mir-33-P3

Family name

MIR-33 (all species)

Seed

UGCAUUG

Species

Rabbit (Oryctolagus cuniculus)

MiRBase ID

ocu-mir-33a

Paralogues

Ocu-Mir-33-P1

Orthologues

Aae-Mir-33 Aca-Mir-33-P3 Ami-Mir-33-P3 Bge-Mir-33 Bta-Mir-33-P3 Cfa-Mir-33-P3 Cgi-Mir-33 Cin-Mir-33 Cli-Mir-33-P3 Cmi-Mir-33-P3 Cpi-Mir-33-P3 Cpo-Mir-33-P3 Csc-Mir-33 Cte-Mir-33 Dan-Mir-33 Dma-Mir-33 Dme-Mir-33 Dmo-Mir-33 Dno-Mir-33-P3 Dpu-Mir-33 Dsi-Mir-33 Dya-Mir-33 Ebu-Mir-33 Efe-Mir-33 Esc-Mir-33 Ete-Mir-33-P3 Gga-Mir-33-P3 Gja-Mir-33-P3 Hsa-Mir-33-P3 Isc-Mir-33 Lch-Mir-33-P3 Lgi-Mir-33 Loc-Mir-33-P3 Mal-Mir-33-P3 Mdo-Mir-33-P3 Mml-Mir-33-P3 Mmu-Mir-33-P3 Mun-Mir-33-P3 Npo-Mir-33 Oan-Mir-33-P3 Obi-Mir-33 Ovu-Mir-33 Pbv-Mir-33-P3 Pfl-Mir-33 Pma-Mir-33-o3 Pmi-Mir-33 Rno-Mir-33-P3 Sha-Mir-33-P3 Sko-Mir-33 Spt-Mir-33-P3 Spu-Mir-33 Sto-Mir-33-P3 Tca-Mir-33 Tgu-Mir-33-P3 Tni-Mir-33-P3 Xbo-Mir-33 Xla-Mir-33-P3a Xla-Mir-33-P3b Xtr-Mir-33-P3

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(oryCun2_add)

chrUn0036: 661092-661151 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GGCAGCGCCCCCUCCUGGCGGGCAGCUGCGGUGCAUUGUAGUUGCAUUGCAUGUUCUGGAAGUACCGUGCAAUGUUUCCACAGUGCAUCCCAGAGGCCUGCCCGGCCCUCGGACACUCGC

Get precursor sequence

Structure

        10          20        30        40        50         
GGCAGCGCCCCCUCCUG--|     AG   C          AGUU        UGUUCUG 
                   GCGGGC  CUG GGUGCAUUGU    GCAUUGCA       G
                   CGUCCG  GAC CUACGUGACA    UGUAACGU       A
CGCUCACAGGCUCCCGGCC^     GA   C          CCUU        GCCAUGA 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

He	Ki	Te	To	Wh

Mature sequence

Ocu-Mir-33-P3_5p

mirBase accession

MIMAT0048165

Sequence

0- GUGCAUUGUAGUUGCAUUGCA -21

Get sequence

Star sequence

Ocu-Mir-33-P3_3p*

mirBase accession

MIMAT0048166

Sequence

39- CAAUGUUUCCACAGUGCAUCC -60

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