MirGeneDB 2.1
MirGeneDB ID

Cmi-Mir-33-P3

Family name MIR-33 (all species)
Seed UGCAUUG
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues Cmi-Mir-33-P1 
Orthologues Aae-Mir-33  Aca-Mir-33-P3  Ami-Mir-33-P3  Bge-Mir-33  Bta-Mir-33-P3  Cfa-Mir-33-P3  Cgi-Mir-33  Cin-Mir-33  Cli-Mir-33-P3  Cpi-Mir-33-P3  Cpo-Mir-33-P3  Csc-Mir-33  Cte-Mir-33  Dan-Mir-33  Dma-Mir-33  Dme-Mir-33  Dmo-Mir-33  Dno-Mir-33-P3  Dpu-Mir-33  Dsi-Mir-33  Dya-Mir-33  Ebu-Mir-33  Efe-Mir-33  Esc-Mir-33  Ete-Mir-33-P3  Gga-Mir-33-P3  Gja-Mir-33-P3  Hsa-Mir-33-P3  Isc-Mir-33  Lch-Mir-33-P3  Lgi-Mir-33  Loc-Mir-33-P3  Mal-Mir-33-P3  Mdo-Mir-33-P3  Mml-Mir-33-P3  Mmu-Mir-33-P3  Mun-Mir-33-P3  Npo-Mir-33  Oan-Mir-33-P3  Obi-Mir-33  Ocu-Mir-33-P3  Ovu-Mir-33  Pbv-Mir-33-P3  Pfl-Mir-33  Pma-Mir-33-o3  Pmi-Mir-33  Rno-Mir-33-P3  Sha-Mir-33-P3  Sko-Mir-33  Spt-Mir-33-P3  Spu-Mir-33  Sto-Mir-33-P3  Tca-Mir-33  Tgu-Mir-33-P3  Tni-Mir-33-P3  Xbo-Mir-33  Xla-Mir-33-P3a  Xla-Mir-33-P3b  Xtr-Mir-33-P3 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI636153.1: 47935-47993 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UCUCAAUGAAUGUUGAUGGUGGUCGCUGUGGUGCAUUGUAGUUGCAUUGCAUGUGCCGCCAUGUUGUGCAAUGUGUCUGCAGUGCAAUACAGAGGUCAGCAAUACAGAGAUCGACAUCU
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Structure
        10          20        30        40        50         
UCUCAAUGAAUGUUGAU--|G  GU G     G          U         UGUGCCG 
                   G UG  C CUGUG UGCAUUGUAG UGCAUUGCA       \
                   C AC  G GACAU ACGUGACGUC GUGUAACGU       C
UCUACAGCUAGAGACAUAA^G  UG A     A          U         GUUGUAC 
       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Mature sequence

Cmi-Mir-33-P3_5p
mirBase accessionNone
Sequence 
0- GUGCAUUGUAGUUGCAUUGCA -21
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Star sequence

Cmi-Mir-33-P3_3p*
mirBase accessionNone
Sequence 
38- CAAUGUGUCUGCAGUGCAAUA -59
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