MirGeneDB 2.1
MirGeneDB ID

Tca-Mir-33

Family name MIR-33 (all species)
Seed UGCAUUG
Species Red flour beetle (Tribolium castaneum)
MiRBase ID tca-mir-33
Paralogues
Orthologues Aae-Mir-33  Aca-Mir-33-P1  Aca-Mir-33-P3  Ami-Mir-33-P1  Ami-Mir-33-P3  Bfl-Mir-33-P6  Bfl-Mir-33-P7  Bge-Mir-33  Bla-Mir-33-P6  Bla-Mir-33-P7  Bta-Mir-33-P1  Bta-Mir-33-P3  Cfa-Mir-33-P1  Cfa-Mir-33-P3  Cgi-Mir-33  Cin-Mir-33  Cli-Mir-33-P1  Cli-Mir-33-P3  Cmi-Mir-33-P1  Cmi-Mir-33-P3  Cpi-Mir-33-P1  Cpi-Mir-33-P3  Cpo-Mir-33-P1  Cpo-Mir-33-P3  Csc-Mir-33  Cte-Mir-33  Dan-Mir-33  Dma-Mir-33  Dme-Mir-33  Dmo-Mir-33  Dno-Mir-33-P1  Dno-Mir-33-P3  Dpu-Mir-33  Dre-Mir-33-P1a  Dsi-Mir-33  Dya-Mir-33  Ebu-Mir-33  Efe-Mir-33  Esc-Mir-33  Ete-Mir-33-P1  Ete-Mir-33-P3  Gga-Mir-33-P1  Gga-Mir-33-P3  Gja-Mir-33-P1  Gja-Mir-33-P3  Gmo-Mir-33-P1a  Gmo-Mir-33-P1b  Hme-Mir-33-P8  Hme-Mir-33-P9  Hsa-Mir-33-P1  Hsa-Mir-33-P3  Isc-Mir-33  Lan-Mir-33-P10  Lan-Mir-33-P11  Lch-Mir-33-P1  Lch-Mir-33-P3  Lgi-Mir-33  Loc-Mir-33-P1  Loc-Mir-33-P3  Lpo-Mir-33-P12  Lpo-Mir-33-P13  Lpo-Mir-33-P14  Mal-Mir-33-P1a  Mal-Mir-33-P1b  Mal-Mir-33-P3  Mdo-Mir-33-P3  Mml-Mir-33-P1  Mml-Mir-33-P3  Mmu-Mir-33-P3  Mun-Mir-33-P1  Mun-Mir-33-P3  Npo-Mir-33  Oan-Mir-33-P1  Oan-Mir-33-P3  Obi-Mir-33  Ocu-Mir-33-P1  Ocu-Mir-33-P3  Ovu-Mir-33  Pbv-Mir-33-P1  Pbv-Mir-33-P3  Pfl-Mir-33  Pma-Mir-33-o1  Pma-Mir-33-o2  Pma-Mir-33-o3  Pmi-Mir-33  Rno-Mir-33-P3  Sha-Mir-33-P3  Sko-Mir-33  Spt-Mir-33-P1  Spt-Mir-33-P3  Spu-Mir-33  Sto-Mir-33-P1  Sto-Mir-33-P3  Tgu-Mir-33-P1  Tgu-Mir-33-P3  Tni-Mir-33-P1a  Tni-Mir-33-P1b  Tni-Mir-33-P3  Xbo-Mir-33  Xla-Mir-33-P1c  Xla-Mir-33-P1d  Xla-Mir-33-P3a  Xla-Mir-33-P3b  Xtr-Mir-33-P1  Xtr-Mir-33-P3 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Tcas5.2)		 LG4: 8315299-8315354 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AAGAAAAGAAGAUGAAUAUUAUGAUCUUAGGUGCAUUGUAGUUGCAUUGCAUGUUAUUCAAAGUGCAGUGUCUCUCCAGUGCAACUUAGCGCAUAAUUUCACACCUCUGGAACCGU
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Structure
        10          20        30         40        50       
AAGAAAAGAAGAUGAAU--|     AUC      -      U  UU        UGUUA 
                   AUUAUG   UUAGGU GCAUUG AG  GCAUUGCA     U
                   UAAUAC   GAUUCA CGUGAC UC  UGUGACGU     U
UGCCAAGGUCUCCACACUU^     GC-      A      C  UC        GAAAC 
    110       100        90         80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Ad Ea Em Em Em Em Em Fe Fe Fe Fe Oo
Mature sequence

Tca-Mir-33_5p
mirBase accessionMIMAT0008363
Sequence 
0- GUGCAUUGUAGUUGCAUUGCA -21
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Star sequence

Tca-Mir-33_3p*
mirBase accessionMIMAT0019107
Sequence 
35- CAGUGUCUCUCCAGUGCAACU -56
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