MirGeneDB 3.0
MirGeneDB ID

Lpo-Mir-33-P13

Family name MIR-33 (all species)
Seed UGCAUUG
Species Atlantic horseshoe crab (Limulus polyphemus)
MiRBase ID
Paralogues Lpo-Mir-33-P12  Lpo-Mir-33-P14 
Orthologues Aae-Mir-33  Aga-Mir-33  Ava-Mir-33  Bge-Mir-33  Cin-Mir-33  Csc-Mir-33  Cte-Mir-33  Dan-Mir-33  Dgr-Mir-33  Dlo-Mir-33  Dma-Mir-33  Dme-Mir-33  Dmo-Mir-33  Dpu-Mir-33  Dsi-Mir-33  Dya-Mir-33  Eba-Mir-33  Ebu-Mir-33  Efe-Mir-33  Egr-Mir-33  Esc-Mir-33  Gpa-Mir-33  Gsp-Mir-33  Hru-Mir-33  Isc-Mir-33  Lgi-Mir-33  Llo-Mir-33  Mgi-Mir-33  Mom-Mir-33  Npo-Mir-33  Obi-Mir-33  Ofu-Mir-33  Ovu-Mir-33  Pau-Mir-33  Pca-Mir-33  Pcr-Mir-33  Pdu-Mir-33  Pfl-Mir-33  Pmi-Mir-33  Sko-Mir-33  Snu-Mir-33  Spu-Mir-33  Tca-Mir-33  War-Mir-33  Xbo-Mir-33 
Node of Origin (locus) L. polyphemus
Node of Origin (family) Bilateria
Genome context
(GCF_000517525.1_Limulus_polyphemus-2.1.2_genomic)		 NW_013670125.1: 79713-79770 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AAAAAUACAUGUGAAUUGGGUGCUUCUGUCGUGCAUUGUAGUUGCAUUGCAUUGUUAUUUAUUUUUGCAAUGCAUCCACAGUGCAAUUACAGAGACUUCAUAUGCAUCUGUCUCGAAA
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Structure
        10           20        30         40        50        
AAAAAUACAUGUGAAUU---|   G  U    CG-        AGU         UUGUUA 
                    GGGU CU CUGU   UGCAUUGU   UGCAUUGCA      U
                    UUCA GA GACA   ACGUGACA   ACGUAACGU      U
AAAGCUCUGUCUACGUAUAC^   -  -    UUA        CCU         UUUUAU 
      110       100          90        80        70        60
Deep sequencing
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3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Ge Ge So So So To
Mature sequence

Lpo-Mir-33-P13_5p
mirBase accessionNone
Sequence 
0- GUGCAUUGUAGUUGCAUUGCA -21
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Star sequence

Lpo-Mir-33-P13_3p* (predicted)
mirBase accessionNone
Sequence 
37- CAAUGCAUCCACAGUGCAAUU -58
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