MirGeneDB 3.0
MirGeneDB ID

Bla-Mir-33-P6

Family name MIR-33 (all species)
Seed UGCAUUG
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-33-P7 
Orthologues Aae-Mir-33  Aga-Mir-33  Ava-Mir-33  Bfl-Mir-33-P6  Bge-Mir-33  Cin-Mir-33  Csc-Mir-33  Cte-Mir-33  Dan-Mir-33  Dgr-Mir-33  Dlo-Mir-33  Dma-Mir-33  Dme-Mir-33  Dmo-Mir-33  Dpu-Mir-33  Dsi-Mir-33  Dya-Mir-33  Eba-Mir-33  Ebu-Mir-33  Efe-Mir-33  Egr-Mir-33  Esc-Mir-33  Gpa-Mir-33  Gsp-Mir-33  Hru-Mir-33  Isc-Mir-33  Lgi-Mir-33  Llo-Mir-33  Mgi-Mir-33  Mom-Mir-33  Npo-Mir-33  Obi-Mir-33  Ofu-Mir-33  Ovu-Mir-33  Pau-Mir-33  Pca-Mir-33  Pcr-Mir-33  Pdu-Mir-33  Pfl-Mir-33  Pmi-Mir-33  Sko-Mir-33  Snu-Mir-33  Spu-Mir-33  Tca-Mir-33  War-Mir-33  Xbo-Mir-33 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(BraLan2)		 Sc0000046: 702051-702109 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CUGAAGAAGAGCAAAAGACCUGUUGCUAGGGUGCAUUGUAGUUGCAUUGCAUGUGCACAACAGAAGUGCAAUGUAACUGCAGUGCAGCCCAGAGGCAGGACCAGACCACUACUUACAUG
Get precursor sequence
Structure
        10          20        30         40        50         
CUGAAGAAGAGCAAAAGA--|    UG  A   -                    UGUGCAC 
                    CCUGU  CU GGG UGCAUUGUAGUUGCAUUGCA       \
                    GGACG  GA CCC ACGUGACGUCAAUGUAACGU       A
GUACAUUCAUCACCAGACCA^    GA  -   G                    GAAGACA 
       110       100         90        80        70        60
Deep sequencing
Go to detailed chart
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Ad Ad Em Em Em Em
Mature sequence

Bla-Mir-33-P6_5p
mirBase accessionNone
Sequence 
0- GUGCAUUGUAGUUGCAUUGCA -21
Get sequence
Star sequence

Bla-Mir-33-P6_3p* (predicted)
mirBase accessionNone
Sequence 
38- CAAUGUAACUGCAGUGCAGCC -59
Get sequence