MirGeneDB 3.0
MirGeneDB ID

Bfl-Mir-33-P6

Family name MIR-33 (all species)
Seed UGCAUUG
Species Florida lancelet (Branchiostoma floridae)
MiRBase ID bfl-mir-33-2
Paralogues Bfl-Mir-33-P7 
Orthologues Aae-Mir-33  Aga-Mir-33  Ava-Mir-33  Bge-Mir-33  Bla-Mir-33-P6  Cin-Mir-33  Csc-Mir-33  Cte-Mir-33  Dan-Mir-33  Dgr-Mir-33  Dlo-Mir-33  Dma-Mir-33  Dme-Mir-33  Dmo-Mir-33  Dpu-Mir-33  Dsi-Mir-33  Dya-Mir-33  Eba-Mir-33  Ebu-Mir-33  Efe-Mir-33  Egr-Mir-33  Esc-Mir-33  Gpa-Mir-33  Gsp-Mir-33  Hru-Mir-33  Isc-Mir-33  Lgi-Mir-33  Llo-Mir-33  Mgi-Mir-33  Mom-Mir-33  Npo-Mir-33  Obi-Mir-33  Ofu-Mir-33  Ovu-Mir-33  Pau-Mir-33  Pca-Mir-33  Pcr-Mir-33  Pdu-Mir-33  Pfl-Mir-33  Pmi-Mir-33  Sko-Mir-33  Snu-Mir-33  Spu-Mir-33  Tca-Mir-33  War-Mir-33  Xbo-Mir-33 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(GCF_000003815.2_Bfl_VNyyK_genomic)		 NC_049985.1: 3904364-3904422 [-] UCSC
Clustered miRNAs
(< 50kb from Mir-33-P6)		 Mir-33-P7 NC_049985.1: 3903955-3904013 [-] UCSC
Mir-33-P6 NC_049985.1: 3904364-3904422 [-] UCSC
Precursor
(pre-Mir +30nt flank)
ACUCUGAGAGAGAGAACACCUGUUGCUAGGGUGCAUUGUAGUUGCAUUGCAUGUGCAACACAGAAGUGCAAUGUAACUGCAGUGCAGCCCAGAGGCAGGAACAGACCACUAUGUACUUA
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Structure
        10          20        30         40        50         
ACUCUGAGAGAGAGAACA--|    UG  A   -                    UGUGCAA 
                    CCUGU  CU GGG UGCAUUGUAGUUGCAUUGCA       \
                    GGACG  GA CCC ACGUGACGUCAAUGUAACGU       C
AUUCAUGUAUCACCAGACAA^    GA  -   G                    GAAGACA 
       110       100         90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Bfl-Mir-33-P6_5p
mirBase accessionMIMAT0009474
Sequence 
0- GUGCAUUGUAGUUGCAUUGCA -21
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Star sequence

Bfl-Mir-33-P6_3p*
mirBase accessionNone
Sequence 
38- CAAUGUAACUGCAGUGCAGCC -59
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