MirGeneDB 3.0
MirGeneDB ID

Bla-Mir-33-P7

Family name MIR-33 (all species)
Seed AAUGUAA
Species European lancelet (Branchiostoma lanceolatum)
MiRBase ID
Paralogues Bla-Mir-33-P6 
Orthologues Aae-Mir-33  Aga-Mir-33  Ava-Mir-33  Bfl-Mir-33-P7  Bge-Mir-33  Cin-Mir-33  Csc-Mir-33  Cte-Mir-33  Dan-Mir-33  Dgr-Mir-33  Dlo-Mir-33  Dma-Mir-33  Dme-Mir-33  Dmo-Mir-33  Dpu-Mir-33  Dsi-Mir-33  Dya-Mir-33  Eba-Mir-33  Ebu-Mir-33  Efe-Mir-33  Egr-Mir-33  Esc-Mir-33  Gpa-Mir-33  Gsp-Mir-33  Hru-Mir-33  Isc-Mir-33  Lgi-Mir-33  Llo-Mir-33  Mgi-Mir-33  Mom-Mir-33  Npo-Mir-33  Obi-Mir-33  Ofu-Mir-33  Ovu-Mir-33  Pau-Mir-33  Pca-Mir-33  Pcr-Mir-33  Pdu-Mir-33  Pfl-Mir-33  Pmi-Mir-33  Sko-Mir-33  Snu-Mir-33  Spu-Mir-33  Tca-Mir-33  War-Mir-33  Xbo-Mir-33 
Node of Origin (locus) Branchiostoma
Node of Origin (family) Bilateria
Genome context
(BraLan2)		 Sc0000046: 702442-702500 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAGGCGCACACCACCUUCUCUGUGGCUGAGGUGCAUUGUAGUUGCAUUGCAUGUGCAAAAGCAGAAGUGCAAUGUAACAGCAGUGCAGCUCAGACACGGUUGCAAUGCAAGGACAAUGC
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Structure
        10         20        30        40        50         
CAGGCGCACACCACCUUCU-|    G     G        A           UGUGCAA 
                    CUGUG CUGAG UGCAUUGU GUUGCAUUGCA       A
                    GGCAC GACUC ACGUGACG CAAUGUAACGU       A
CGUAACAGGAACGUAACGUU^    A     G        A           GAAGACG 
       110       100        90        80        70        60
Deep sequencing
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CommentAlthough the 3' U on the 3p arm is templated in B. floridae is is untemplated and thus here it is assumed that the 3p arm is monouridylated.
3' NTU Yes
MotifsUGUG in loop
Tissue expression
-   +
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Star sequence

Bla-Mir-33-P7_5p*
mirBase accessionNone
Sequence 
0- GUGCAUUGUAGUUGCAUUGCA -21
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Mature sequence

Bla-Mir-33-P7_3p
mirBase accessionNone
Sequence 
39- CAAUGUAACAGCAGUGCAGC -59
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