MirGeneDB 2.1

MirGeneDB ID

Mal-Mir-33-P1b

Family name MIR-33 (all species)
Seed UGCAUUG
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-33-P1a  Mal-Mir-33-P3 
Orthologues Aae-Mir-33  Aca-Mir-33-P1  Ami-Mir-33-P1  Bge-Mir-33  Bta-Mir-33-P1  Cfa-Mir-33-P1  Cgi-Mir-33  Cin-Mir-33  Cli-Mir-33-P1  Cmi-Mir-33-P1  Cpi-Mir-33-P1  Cpo-Mir-33-P1  Csc-Mir-33  Cte-Mir-33  Dan-Mir-33  Dma-Mir-33  Dme-Mir-33  Dmo-Mir-33  Dno-Mir-33-P1  Dpu-Mir-33  Dsi-Mir-33  Dya-Mir-33  Ebu-Mir-33  Efe-Mir-33  Esc-Mir-33  Ete-Mir-33-P1  Gga-Mir-33-P1  Gja-Mir-33-P1  Gmo-Mir-33-P1b  Hsa-Mir-33-P1  Isc-Mir-33  Lch-Mir-33-P1  Lgi-Mir-33  Loc-Mir-33-P1  Mml-Mir-33-P1  Mun-Mir-33-P1  Npo-Mir-33  Oan-Mir-33-P1  Obi-Mir-33  Ocu-Mir-33-P1  Ovu-Mir-33  Pbv-Mir-33-P1  Pfl-Mir-33  Pma-Mir-33-o1  Pmi-Mir-33  Sko-Mir-33  Spt-Mir-33-P1  Spu-Mir-33  Sto-Mir-33-P1  Tca-Mir-33  Tgu-Mir-33-P1  Tni-Mir-33-P1b  Xbo-Mir-33  Xtr-Mir-33-P1 
Node of Origin (locus) Clupeocephala
Node of Origin (family) Bilateria
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)
KV884859.1: 677355-677414 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GUAUGGAUGAAAAUUCUGGCUGGAGCUGUGGUGCAUUGUAGUUGCAUUGCAUGUUAUGCUAACACACUGCAAUGGAUCUGCUUUGCAACACAGAACUUGGCCAUAAUGCAACCAUCAGCA
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Structure
        10         20         30        40        50         
GUAUGGAUGAAAAUUCU-   UG AG-|    G    UU    UUG       UGUUAUG 
                  GGC  G   CUGUG UGCA  GUAG   CAUUGCA       C
                  CCG  U   GACAC ACGU  CGUC   GUAACGU       U
ACGACUACCAACGUAAUA   GU CAA^    A    UU    UAG       CACACAA 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
 +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-33-P1b_5p

mirBase accessionNone
Sequence
0- GUGCAUUGUAGUUGCAUUGCA -21
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Co-mature sequence

Mal-Mir-33-P1b_3p

mirBase accessionNone
Sequence
39- CAAUGGAUCUGCUUUGCAACA -60
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