MirGeneDB ID | Bta-Mir-33-P1 |
Family name |
MIR-33 (all species) |
Seed |
UGCAUUG |
Species |
Cow (Bos taurus) |
MiRBase ID |
bta-mir-33b
|
Paralogues |
Bta-Mir-33-P3
|
Orthologues |
Aae-Mir-33
Aca-Mir-33-P1
Ami-Mir-33-P1
Bge-Mir-33
Cfa-Mir-33-P1
Cgi-Mir-33
Cin-Mir-33
Cli-Mir-33-P1
Cmi-Mir-33-P1
Cpi-Mir-33-P1
Cpo-Mir-33-P1
Csc-Mir-33
Cte-Mir-33
Dan-Mir-33
Dma-Mir-33
Dme-Mir-33
Dmo-Mir-33
Dno-Mir-33-P1
Dpu-Mir-33
Dre-Mir-33-P1a
Dsi-Mir-33
Dya-Mir-33
Ebu-Mir-33
Efe-Mir-33
Esc-Mir-33
Ete-Mir-33-P1
Gga-Mir-33-P1
Gja-Mir-33-P1
Gmo-Mir-33-P1a
Gmo-Mir-33-P1b
Hsa-Mir-33-P1
Isc-Mir-33
Lch-Mir-33-P1
Lgi-Mir-33
Loc-Mir-33-P1
Mal-Mir-33-P1a
Mal-Mir-33-P1b
Mml-Mir-33-P1
Mun-Mir-33-P1
Npo-Mir-33
Oan-Mir-33-P1
Obi-Mir-33
Ocu-Mir-33-P1
Ovu-Mir-33
Pbv-Mir-33-P1
Pfl-Mir-33
Pma-Mir-33-o1
Pmi-Mir-33
Sko-Mir-33
Spt-Mir-33-P1
Spu-Mir-33
Sto-Mir-33-P1
Tca-Mir-33
Tgu-Mir-33-P1
Tni-Mir-33-P1a
Tni-Mir-33-P1b
Xbo-Mir-33
Xla-Mir-33-P1c
Xla-Mir-33-P1d
Xtr-Mir-33-P1
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Bilateria
|
Genome context (GCF_002263795.1_ARS-UCD1.2_BTA) |
NC_037346.1: 34647563-34647619 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AUGGGGGCCUGGAGAGCGGGCGGCCCCGCGGUGCAUUGCUGUUGCAUUGCAUGUGUGAGGCAGGUGCAGUGCCUCGGCAGUGCAGCCCGGAGCCGGCCCCUGGCACCGCGGGCCCCC
Get precursor sequence
|
Structure | 10 20 30 40 50
AUGGGGGCCUGGAGAGC- -| C C - UU UGUGUG
GGG CGGC CCG GG UGCAUUGCUG GCAUUGCA \
CCC GCCG GGC CC ACGUGACGGC CGUGACGU A
CCCCCGGGCGCCACGGUC G^ A - G UC GGACGG
110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
Ad |
Cd |
Fe |
Bo |
Br |
Ce |
Co |
Co |
De |
He |
Hy |
Ir |
Ki |
La |
Lo |
No |
Op |
Or |
Pe |
Re |
Su |
Te |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Mature sequence |
Bta-Mir-33-P1_5p |
mirBase accession | MIMAT0009295 |
Sequence |
0- GUGCAUUGCUGUUGCAUUGCA -21
Get sequence
|
Proposed targets |
TargetScanVert: bta-miR-33b
|
Star sequence |
Bta-Mir-33-P1_3p* |
mirBase accession | None |
Sequence |
36- CAGUGCCUCGGCAGUGCAGCC -57
Get sequence
|