Mir-33-P1a

MirGeneDB ID

Dre-Mir-33-P1a

Family name

MIR-33 (all species)

Seed

AAUGUUC

Species

Zebrafish (Danio rerio)

MiRBase ID

Paralogues

Orthologues

Aae-Mir-33 Aca-Mir-33-P1 Aga-Mir-33 Ami-Mir-33-P1 Ava-Mir-33 Bge-Mir-33 Bta-Mir-33-P1 Cfa-Mir-33-P1 Cin-Mir-33 Cja-Mir-33-P1 Cli-Mir-33-P1 Cmi-Mir-33-P1 Cpi-Mir-33-P1 Cpo-Mir-33-P1 Csc-Mir-33 Cte-Mir-33 Dan-Mir-33 Dgr-Mir-33 Dlo-Mir-33 Dma-Mir-33 Dme-Mir-33 Dmo-Mir-33 Dno-Mir-33-P1 Dpu-Mir-33 Dsi-Mir-33 Dya-Mir-33 Eba-Mir-33 Ebu-Mir-33 Eca-Mir-33-P1 Efe-Mir-33 Egr-Mir-33 Esc-Mir-33 Ete-Mir-33-P1 Gga-Mir-33-P1 Gja-Mir-33-P1 Gmo-Mir-33-P1a Gpa-Mir-33 Gsp-Mir-33 Hru-Mir-33 Hsa-Mir-33-P1 Isc-Mir-33 Laf-Mir-33-P1 Lch-Mir-33-P1 Lgi-Mir-33 Llo-Mir-33 Loc-Mir-33-P1 Mal-Mir-33-P1a Mgi-Mir-33 Mml-Mir-33-P1 Mmr-Mir-33-P1 Mom-Mir-33 Mun-Mir-33-P1 Npo-Mir-33 Oan-Mir-33-P1 Obi-Mir-33 Ocu-Mir-33-P1 Ofu-Mir-33 Ovu-Mir-33 Pab-Mir-33-P1 Pau-Mir-33 Pbv-Mir-33-P1 Pca-Mir-33 Pcr-Mir-33 Pdu-Mir-33 Pfl-Mir-33 Pma-Mir-33-o1 Pmi-Mir-33 Sko-Mir-33 Snu-Mir-33 Spt-Mir-33-P1 Spu-Mir-33 Sto-Mir-33-P1 Tca-Mir-33 Tgu-Mir-33-P1 Tni-Mir-33-P1a War-Mir-33 Xbo-Mir-33 Xtr-Mir-33-P1

Node of Origin (locus)

Clupeocephala

Node of Origin (family)

Bilateria

Genome context
(danRer11)

LKPD01061375.1: 1389-1445 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GCGCGCACAUGUGUCCUGGGCGGAGCUGUAGUGCAUUGUAGUUGCAUUGCAUGUGUGUGUAGUGUGCAAUGUUCCUGCAGUGCAACACAGAGCUGCACCACUGAUCCUCCAGCCCGA

Get precursor sequence

Structure

        10          20        30        40        50        
GCGCGCACAUGUGUCCU-  -|   AG    AG          UU        UGUGUG 
                  GG GCGG  CUGU  UGCAUUGUAG  GCAUUGCA      \
                  CC CGUC  GACA  ACGUGACGUC  UGUAACGU      U
AGCCCGACCUCCUAGUCA  A^   GA    CA          CU        GUGAUG 
     110       100        90        80        70        60

Deep sequencing

Go to detailed chart

Comment

Not in assembly but in trace archive.

3' NTU

Motifs

UG at 5p(-14), UGUG in loop

Tissue expression

Br	Br	Em	Ey	Gu	Gu	He	Li	Li	Ov	Te

Star sequence

Dre-Mir-33-P1a_5p*

mirBase accession

None

Sequence

0- GUGCAUUGUAGUUGCAUUGCA -21

Get sequence

Mature sequence

Dre-Mir-33-P1a_3p

mirBase accession

None

Sequence

36- CAAUGUUCCUGCAGUGCAACA -57

Get sequence