MirGeneDB 3.0
MirGeneDB ID

Lch-Mir-33-P1

Family name MIR-33 (all species)
Seed UGCAUUG
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-33-P3 
Orthologues Aae-Mir-33  Aca-Mir-33-P1  Aga-Mir-33  Ami-Mir-33-P1  Ava-Mir-33  Bge-Mir-33  Bta-Mir-33-P1  Cfa-Mir-33-P1  Cin-Mir-33  Cja-Mir-33-P1  Cli-Mir-33-P1  Cmi-Mir-33-P1  Cpi-Mir-33-P1  Cpo-Mir-33-P1  Csc-Mir-33  Cte-Mir-33  Dan-Mir-33  Dgr-Mir-33  Dlo-Mir-33  Dma-Mir-33  Dme-Mir-33  Dmo-Mir-33  Dno-Mir-33-P1  Dpu-Mir-33  Dre-Mir-33-P1a  Dsi-Mir-33  Dya-Mir-33  Eba-Mir-33  Ebu-Mir-33  Eca-Mir-33-P1  Efe-Mir-33  Egr-Mir-33  Esc-Mir-33  Ete-Mir-33-P1  Gga-Mir-33-P1  Gja-Mir-33-P1  Gmo-Mir-33-P1a  Gmo-Mir-33-P1b  Gpa-Mir-33  Gsp-Mir-33  Hru-Mir-33  Hsa-Mir-33-P1  Isc-Mir-33  Laf-Mir-33-P1  Lgi-Mir-33  Llo-Mir-33  Loc-Mir-33-P1  Mal-Mir-33-P1a  Mal-Mir-33-P1b  Mgi-Mir-33  Mml-Mir-33-P1  Mmr-Mir-33-P1  Mom-Mir-33  Mun-Mir-33-P1  Npo-Mir-33  Oan-Mir-33-P1  Obi-Mir-33  Ocu-Mir-33-P1  Ofu-Mir-33  Ovu-Mir-33  Pab-Mir-33-P1  Pau-Mir-33  Pbv-Mir-33-P1  Pca-Mir-33  Pcr-Mir-33  Pdu-Mir-33  Pfl-Mir-33  Pma-Mir-33-o1  Pmi-Mir-33  Sko-Mir-33  Snu-Mir-33  Spt-Mir-33-P1  Spu-Mir-33  Sto-Mir-33-P1  Tca-Mir-33  Tgu-Mir-33-P1  Tni-Mir-33-P1a  Tni-Mir-33-P1b  War-Mir-33  Xbo-Mir-33  Xla-Mir-33-P1c  Xla-Mir-33-P1d  Xtr-Mir-33-P1 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)		 BAHO01271459.1: 1204-1263 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UAGGACGGAGGAGGUCUAGCUGCAGCUGUGGUGCAUUGUAGUUGCAUUGCAUGUGUCUGUCAGGUUGUGCAAUGCACCUGCAAUGCAAUACGGAGUCUGGCUAUAAGCAUCAAUCAAAAU
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Structure
        10         20         30        40        50         
UAGGACGGAGGAGGUCU-    GCAG-|    G          U         UGUGUCU 
                  AGCU     CUGUG UGCAUUGUAG UGCAUUGCA       G
                  UCGG     GGCAU ACGUAACGUC ACGUAACGU       U
UAAAACUAACUACGAAUA    UCUGA^    A          C         GUUGGAC 
.       110       100        90        80        70        60
Deep sequencing
CommentNot in assembly but in trace archive.
3' NTU Unknown
MotifsCNNC at 3p(+17), UGUG in loop
Mature sequence

Lch-Mir-33-P1_5p (predicted)
mirBase accessionNone
Sequence 
0- GUGCAUUGUAGUUGCAUUGCA -21
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Star sequence

Lch-Mir-33-P1_3p* (predicted)
mirBase accessionNone
Sequence 
39- CAAUGCACCUGCAAUGCAAUA -60
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