MirGeneDB 3.0
MirGeneDB ID

Pma-Mir-33-o2

Family name MIR-33 (all species)
Seed UGCAUUG
Species Sea Lamprey (Petromyzon marinus)
MiRBase ID pma-mir-33b
Paralogues Pma-Mir-33-o1  Pma-Mir-33-o3 
Orthologues Aae-Mir-33  Aga-Mir-33  Ava-Mir-33  Bge-Mir-33  Cin-Mir-33  Csc-Mir-33  Cte-Mir-33  Dan-Mir-33  Dgr-Mir-33  Dlo-Mir-33  Dma-Mir-33  Dme-Mir-33  Dmo-Mir-33  Dpu-Mir-33  Dsi-Mir-33  Dya-Mir-33  Eba-Mir-33  Ebu-Mir-33  Efe-Mir-33  Egr-Mir-33  Esc-Mir-33  Gpa-Mir-33  Gsp-Mir-33  Hru-Mir-33  Isc-Mir-33  Lgi-Mir-33  Llo-Mir-33  Mgi-Mir-33  Mom-Mir-33  Npo-Mir-33  Obi-Mir-33  Ofu-Mir-33  Ovu-Mir-33  Pau-Mir-33  Pca-Mir-33  Pcr-Mir-33  Pdu-Mir-33  Pfl-Mir-33  Pmi-Mir-33  Sko-Mir-33  Snu-Mir-33  Spu-Mir-33  Tca-Mir-33  War-Mir-33  Xbo-Mir-33 
Node of Origin (locus) P. marinus
Node of Origin (family) Bilateria
Genome context
(GCF_010993605.1_kPetMar1.pri_genomic)		 NC_046140.1: 1502770-1502832 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GAGGAGGAGGAGUCUCAGUGAGCCGCUAUGCUGCAUUGUUGUUGCAUUGCAUCCUGCAGUGCCUUGUGGGUGCGAUGUAGUAACAGUGCUGCACAGAGACCCACACAGACAGAGACAAAGCUC
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Structure
        10          20        30        40        50        60 
GAGGAGGAGGAGUCUCA--|  AGCCG  A   U                     CUGCAGU 
                   GUG     CU UGC GCAUUGUUGUUGCAUUGCAUC       \
                   CAC     GA ACG CGUGACAAUGAUGUAGCGUGG       G
CUCGAAACAGAGACAGACA^  CCAGA  C   U                     GUGUUCC 
 120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
-   +
Br Gi Gu He Ki La Li Mo Mu Sk
Mature sequence

Pma-Mir-33-o2_5p
mirBase accessionMIMAT0019434
Sequence 
0- CUGCAUUGUUGUUGCAUUGCAUC -23
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Star sequence

Pma-Mir-33-o2_3p*
mirBase accessionNone
Sequence 
40- UGCGAUGUAGUAACAGUGCUGCA -63
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