MirGeneDB 2.1

MirGeneDB ID

Xtr-Mir-33-P3

Family name MIR-33 (all species)
Seed UGCAUUG
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-33b
Paralogues Xtr-Mir-33-P1 
Orthologues Aae-Mir-33  Aca-Mir-33-P3  Ami-Mir-33-P3  Bge-Mir-33  Bta-Mir-33-P3  Cfa-Mir-33-P3  Cgi-Mir-33  Cin-Mir-33  Cli-Mir-33-P3  Cmi-Mir-33-P3  Cpi-Mir-33-P3  Cpo-Mir-33-P3  Csc-Mir-33  Cte-Mir-33  Dan-Mir-33  Dma-Mir-33  Dme-Mir-33  Dmo-Mir-33  Dno-Mir-33-P3  Dpu-Mir-33  Dsi-Mir-33  Dya-Mir-33  Ebu-Mir-33  Efe-Mir-33  Esc-Mir-33  Ete-Mir-33-P3  Gga-Mir-33-P3  Gja-Mir-33-P3  Hsa-Mir-33-P3  Isc-Mir-33  Lch-Mir-33-P3  Lgi-Mir-33  Loc-Mir-33-P3  Mal-Mir-33-P3  Mdo-Mir-33-P3  Mml-Mir-33-P3  Mmu-Mir-33-P3  Mun-Mir-33-P3  Npo-Mir-33  Oan-Mir-33-P3  Obi-Mir-33  Ocu-Mir-33-P3  Ovu-Mir-33  Pbv-Mir-33-P3  Pfl-Mir-33  Pma-Mir-33-o3  Pmi-Mir-33  Rno-Mir-33-P3  Sha-Mir-33-P3  Sko-Mir-33  Spt-Mir-33-P3  Spu-Mir-33  Sto-Mir-33-P3  Tca-Mir-33  Tgu-Mir-33-P3  Tni-Mir-33-P3  Xbo-Mir-33  Xla-Mir-33-P3a  Xla-Mir-33-P3b 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)
chr4: 109768751-109768811 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AUUCAUUGAUAUAAUAUUGGGGUCACCCUGGUGCAUUGUUGUUGCAUUGCAUGUCACCUUGGACGUUGUGCAAUGUUUCUUCAGUGCAGUAUGGUGGUUCCAGCUGUCUUCGUAUCUGCCU
Get precursor sequence
Structure
        10          20        30        40        50          
AUUCAUUGAUAUAAUAU--|  GG     C  G       UUGUU        UGUCACCU 
                   UGG  UCACC UG UGCAUUG     GCAUUGCA        \
                   ACC  GGUGG AU ACGUGAC     UGUAACGU        U
UCCGUCUAUGCUUCUGUCG^  UU     U  G       UUCUU        GUUGCAGG 
 .       110       100        90        80        70
Deep sequencing
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CommentAlthough templated, the 3' NTU is likely a monourydilation given phylogenetic conservation with other taxa.
3' NTU Yes
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Br Em Em Em Em He
Mature sequence

Xtr-Mir-33-P3_5p

mirBase accessionMIMAT0003681
Sequence
0- GUGCAUUGUUGUUGCAUUGCA -21
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Proposed targets TargetScanVert: xtr-miR-33b
Star sequence

Xtr-Mir-33-P3_3p*

mirBase accessionNone
Sequence
40- CAAUGUUUCUUCAGUGCAGUA -61
Get sequence