Mir-33-P3

MirGeneDB ID

Xtr-Mir-33-P3

Family name

MIR-33 (all species)

Seed

UGCAUUG

Species

Tropical clawed frog (Xenopus tropicalis)

MiRBase ID

xtr-mir-33b

Paralogues

Xtr-Mir-33-P1

Orthologues

Aae-Mir-33 Aca-Mir-33-P3 Aga-Mir-33 Ami-Mir-33-P3 Ava-Mir-33 Bge-Mir-33 Bta-Mir-33-P3 Cfa-Mir-33-P3 Cin-Mir-33 Cja-Mir-33-P3 Cli-Mir-33-P3 Cmi-Mir-33-P3 Cpi-Mir-33-P3 Cpo-Mir-33-P3 Csc-Mir-33 Cte-Mir-33 Dan-Mir-33 Dgr-Mir-33 Dlo-Mir-33 Dma-Mir-33 Dme-Mir-33 Dmo-Mir-33 Dno-Mir-33-P3 Dpu-Mir-33 Dsi-Mir-33 Dya-Mir-33 Eba-Mir-33 Ebu-Mir-33 Eca-Mir-33-P3 Efe-Mir-33 Egr-Mir-33 Esc-Mir-33 Ete-Mir-33-P3 Gga-Mir-33-P3 Gja-Mir-33-P3 Gpa-Mir-33 Gsp-Mir-33 Hru-Mir-33 Hsa-Mir-33-P3 Isc-Mir-33 Laf-Mir-33-P3 Lch-Mir-33-P3 Lgi-Mir-33 Llo-Mir-33 Loc-Mir-33-P3 Mal-Mir-33-P3 Mdo-Mir-33-P3 Mgi-Mir-33 Mml-Mir-33-P3 Mmr-Mir-33-P3 Mmu-Mir-33-P3 Mom-Mir-33 Mun-Mir-33-P3 Neu-Mir-33-P3 Npo-Mir-33 Oan-Mir-33-P3 Obi-Mir-33 Ocu-Mir-33-P3 Ofu-Mir-33 Ovu-Mir-33 Pab-Mir-33-P3 Pau-Mir-33 Pbv-Mir-33-P3 Pca-Mir-33 Pcr-Mir-33 Pdu-Mir-33 Pfl-Mir-33 Pma-Mir-33-o3 Pmi-Mir-33 Rno-Mir-33-P3 Sha-Mir-33-P3 Sko-Mir-33 Snu-Mir-33 Spt-Mir-33-P3 Spu-Mir-33 Sto-Mir-33-P3 Tca-Mir-33 Tgu-Mir-33-P3 Tni-Mir-33-P3 War-Mir-33 Xbo-Mir-33 Xla-Mir-33-P3a Xla-Mir-33-P3b

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Bilateria

Genome context
(xenTro9_add)

chr4: 109768751-109768811 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AUUCAUUGAUAUAAUAUUGGGGUCACCCUGGUGCAUUGUUGUUGCAUUGCAUGUCACCUUGGACGUUGUGCAAUGUUUCUUCAGUGCAGUAUGGUGGUUCCAGCUGUCUUCGUAUCUGCCU

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Structure

        10          20        30        40        50          
AUUCAUUGAUAUAAUAU--|  GG     C  G       UUGUU        UGUCACCU 
                   UGG  UCACC UG UGCAUUG     GCAUUGCA        \
                   ACC  GGUGG AU ACGUGAC     UGUAACGU        U
UCCGUCUAUGCUUCUGUCG^  UU     U  G       UUCUU        GUUGCAGG 
 .       110       100        90        80        70

Deep sequencing

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Comment

Although templated, the 3' NTU is likely a monourydilation given phylogenetic conservation with other taxa.

3' NTU

Yes

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

An	Br	Em	Em	He	Ve

Mature sequence

Xtr-Mir-33-P3_5p

mirBase accession

MIMAT0003681

Sequence

0- GUGCAUUGUUGUUGCAUUGCA -21

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Proposed targets

TargetScanVert: xtr-miR-33b

Star sequence

Xtr-Mir-33-P3_3p*

mirBase accession

None

Sequence

40- CAAUGUUUCUUCAGUGCAGUA -61

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