| MirGeneDB ID | Rph-Novel-1-P1a |
|---|---|
| Family name | RPH-NOVEL-1 (all species) |
| Seed | AUAUCUG |
| Species | Japanese carpet shell (Ruditapes philippinarum) |
| MiRBase ID | |
| Paralogues | Rph-Novel-1-P1b |
| Orthologues | |
| Node of Origin (locus) | R. philippinarum |
| Node of Origin (family) | R. philippinarum |
| Genome context (Ruditapes_GCA_009026015) |
|
| Precursor (pre-Mir +30nt flank) | UCGCUGUUGCUGCAGGUAUUGUGUUUCACAUUAGCUAUAUCUGUGGUAACUACGAUAGet precursor sequence |
| Structure | 10 20 --| CU UG U GUUUC UCG GUUGC CAGGUAU GU \ AGC CAAUG GUCUAUA CG A AU^ AU GU U AUUAC 50 40 30 |
| Deep sequencing | |
| 3' NTU | No |
| Motifs | No |
| Star sequence | Rph-Novel-1-P1a_5p* |
| mirBase accession | None |
| Sequence |
0- UCGCUGUUGCUGCAGGUAUUGU -22
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|
| Mature sequence | Rph-Novel-1-P1a_3p |
| mirBase accession | None |
| Sequence |
35- UAUAUCUGUGGUAACUACGAUA -57
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|
