MirGeneDB ID | Rph-Novel-1-P1b |
---|---|
Family name | RPH-NOVEL-1 (all species) |
Seed | AUAUCUG |
Species | Japanese carpet shell (Ruditapes philippinarum) |
MiRBase ID | |
Paralogues | Rph-Novel-1-P1a |
Orthologues | |
Node of Origin (locus) | R. philippinarum |
Node of Origin (family) | R. philippinarum |
Genome context (Ruditapes_GCA_009026015) |
|
Precursor (pre-Mir +30nt flank) | UCGCUGUUGCUGCAGGUAUUGUGUUUCACAUUAGCUAUAUCUGUGGUAACUACGAUAGet precursor sequence |
Structure | 10 20 --| CU UG U GUUUC UCG GUUGC CAGGUAU GU \ AGC CAAUG GUCUAUA CG A AU^ AU GU U AUUAC 50 40 30 |
Deep sequencing | |
3' NTU | No |
Motifs | No |
Star sequence | Rph-Novel-1-P1b_5p* |
mirBase accession | None |
Sequence |
0- UCGCUGUUGCUGCAGGUAUUGU -22
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|
Mature sequence | Rph-Novel-1-P1b_3p |
mirBase accession | None |
Sequence |
35- UAUAUCUGUGGUAACUACGAUA -57
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|