MirGeneDB 3.0
MirGeneDB ID

Rph-Mir-22-P1

Family name MIR-22 (all species)
Seed GCUGCCU
Species Japanese carpet shell (Ruditapes philippinarum)
MiRBase ID
Paralogues Rph-Mir-22-P2 
Orthologues Aca-Mir-22-P1b  Agr-Mir-22-P1  Ami-Mir-22-P1b  Bfl-Mir-22-P1  Bko-Mir-22-P1  Bla-Mir-22-P1  Bpl-Mir-22-P1  Bta-Mir-22-P1b  Cfa-Mir-22-P1b  Cja-Mir-22-P1b  Cli-Mir-22-P1b  Cmi-Mir-22-P1a  Cmi-Mir-22-P1b  Cpi-Mir-22-P1b  Cpo-Mir-22-P1b  Cte-Mir-22-P1  Dno-Mir-22-P1b  Dre-Mir-22-P1a  Dre-Mir-22-P1b1  Dre-Mir-22-P1b2  Eba-Mir-22-P1  Ebu-Mir-22-P1o1  Eca-Mir-22-P1b  Efe-Mir-22-P1c  Efe-Mir-22-P1d  Egr-Mir-22-P1  Esc-Mir-22-P1  Ete-Mir-22-P1b  Gga-Mir-22-P1b  Gja-Mir-22-P1b  Gmo-Mir-22-P1a  Gmo-Mir-22-P1b1  Gmo-Mir-22-P1b2  Gsa-Mir-22-P1  Hru-Mir-22-P1  Hsa-Mir-22-P1b  Laf-Mir-22-P1b  Lan-Mir-22-P1  Lch-Mir-22-P1a  Lch-Mir-22-P1b  Lgi-Mir-22-P1  Lhy-Mir-22-P1  Llo-Mir-22-P1  Loc-Mir-22-P1a  Loc-Mir-22-P1b  Mal-Mir-22-P1a  Mal-Mir-22-P1b1  Mal-Mir-22-P1b2  Mdo-Mir-22-P1b  Mgi-Mir-22-P1  Mml-Mir-22-P1b  Mmr-Mir-22-P1b  Mmu-Mir-22-P1b  Mom-Mir-22-P1  Mun-Mir-22-P1b  Neu-Mir-22-P1b  Npo-Mir-22-P1  Oan-Mir-22-P1b  Obi-Mir-22-P1  Ocu-Mir-22-P1b  Ofu-Mir-22-P1  Ovu-Mir-22-P1  Pab-Mir-22-P1b  Pau-Mir-22-P1  Pbv-Mir-22-P1b  Pca-Mir-22-P1  Pcr-Mir-22-P1  Pdu-Mir-22-P1  Pfl-Mir-22-P1  Pma-Mir-22-P1o2  Pma-Mir-22-P1o3  Pve-Mir-22-P1  Rno-Mir-22-P1b  Sha-Mir-22-P1b  Sma-Mir-22-P1  Sme-Mir-22-P1  Snu-Mir-22-P1  Spt-Mir-22-P1b  Sto-Mir-22-P1a  Sto-Mir-22-P1b  Tgu-Mir-22-P1b  Tni-Mir-22-P1a  Tni-Mir-22-P1b1  Tni-Mir-22-P1b2  War-Mir-22-P1  Xla-Mir-22-P1b3  Xla-Mir-22-P1b4  Xtr-Mir-22-P1b 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Ruditapes_GCA_009026015)		 CM018526.1: 21804995-21805052 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CAAGGUCUUACAGAGGUCACCCCUGAAAGUCAGCUCAUCAUCGGGUAGCCUUGGGUUAGAUAACAAGCUGCCUGAUGAAGAGCUGUCCUUUCUAGGUGAAUAACAACUUUCCUACCUA
Get precursor sequence
Structure
        10           20        30         40        50        
CAAGGUCUUACAGAGGU---|   CCU     U-      A            C   GGUU 
                    CACC   GAAAG  CAGCUC UCAUCGGGUAGC UUG    A
                    GUGG   CUUUC  GUCGAG AGUAGUCCGUCG AAC    G
AUCCAUCCUUUCAACAAUAA^   AU-     CU      A            -   AAUA 
      110       100         90        80        70         60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru Ru
Star sequence

Rph-Mir-22-P1_5p*
mirBase accessionNone
Sequence 
0- CAGCUCAUCAUCGGGUAGCCUUG -23
Get sequence
Mature sequence

Rph-Mir-22-P1_3p
mirBase accessionNone
Sequence 
35- AGCUGCCUGAUGAAGAGCUGUCC -58
Get sequence