Mir-22-P1a

MirGeneDB ID

Mal-Mir-22-P1a

Family name

MIR-22 (all species)

Seed

AGCUGCC

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-22-P1b1 Mal-Mir-22-P1b2

Orthologues

Agr-Mir-22-P1 Bfl-Mir-22-P1 Bko-Mir-22-P1 Bla-Mir-22-P1 Bpl-Mir-22-P1 Cmi-Mir-22-P1a Cte-Mir-22-P1 Dre-Mir-22-P1a Eba-Mir-22-P1 Egr-Mir-22-P1 Esc-Mir-22-P1 Gmo-Mir-22-P1a Gsa-Mir-22-P1 Hru-Mir-22-P1 Lan-Mir-22-P1 Lch-Mir-22-P1a Lgi-Mir-22-P1 Lhy-Mir-22-P1 Llo-Mir-22-P1 Loc-Mir-22-P1a Mgi-Mir-22-P1 Mom-Mir-22-P1 Npo-Mir-22-P1 Obi-Mir-22-P1 Ofu-Mir-22-P1 Ovu-Mir-22-P1 Pau-Mir-22-P1 Pca-Mir-22-P1 Pcr-Mir-22-P1 Pdu-Mir-22-P1 Pfl-Mir-22-P1 Pve-Mir-22-P1 Rph-Mir-22-P1 Sma-Mir-22-P1 Sme-Mir-22-P1 Snu-Mir-22-P1 Sto-Mir-22-P1a Tni-Mir-22-P1a War-Mir-22-P1

Node of Origin (locus)

Vertebrata

Node of Origin (family)

Bilateria

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884711.1: 3584290-3584352 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UCGUGACCCGGCAGUGCGUUACCUCACAGUCGUUCUUCACUGGCUAGCUUUAUGUCCCACGCCUCACGCUAAAGCUGCCAGUUGAAGAGCUGUUGUGUGUAACCAUGACAACAGACCUCUCUG

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Structure

        10           20        30         40        50        60 
UCGUGACCCGGCAGUGC---|    CU     UC        -     U       UGUCCCAC 
                    GUUAC  CACAG  GUUCUUCA CUGGC AGCUUUA        \
                    CAAUG  GUGUU  CGAGAAGU GACCG UCGAAAU        G
GUCUCUCCAGACAACAGUAC^    U-     GU        U     -       CGCACUCC 
 120       110       100         90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Fe	Fe	In	Ma	Ma

Star sequence

Mal-Mir-22-P1a_5p*

mirBase accession

None

Sequence

0- CGUUCUUCACUGGCUAGCUUUA -22

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Mature sequence

Mal-Mir-22-P1a_3p

mirBase accession

None

Sequence

41- AAGCUGCCAGUUGAAGAGCUGU -63

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