MirGeneDB 3.0

MirGeneDB ID

Tni-Mir-22-P1a

Family name MIR-22 (all species)
Seed AGCUGCC
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID tni-mir-22b
Paralogues Tni-Mir-22-P1b1  Tni-Mir-22-P1b2 
Orthologues Agr-Mir-22-P1  Bfl-Mir-22-P1  Bko-Mir-22-P1  Bla-Mir-22-P1  Bpl-Mir-22-P1  Cmi-Mir-22-P1a  Cte-Mir-22-P1  Dre-Mir-22-P1a  Eba-Mir-22-P1  Egr-Mir-22-P1  Esc-Mir-22-P1  Gmo-Mir-22-P1a  Gsa-Mir-22-P1  Hru-Mir-22-P1  Lan-Mir-22-P1  Lch-Mir-22-P1a  Lgi-Mir-22-P1  Lhy-Mir-22-P1  Llo-Mir-22-P1  Loc-Mir-22-P1a  Mal-Mir-22-P1a  Mgi-Mir-22-P1  Mom-Mir-22-P1  Npo-Mir-22-P1  Obi-Mir-22-P1  Ofu-Mir-22-P1  Ovu-Mir-22-P1  Pau-Mir-22-P1  Pca-Mir-22-P1  Pcr-Mir-22-P1  Pdu-Mir-22-P1  Pfl-Mir-22-P1  Pve-Mir-22-P1  Rph-Mir-22-P1  Sma-Mir-22-P1  Sme-Mir-22-P1  Snu-Mir-22-P1  Sto-Mir-22-P1a  War-Mir-22-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)
12: 6138920-6138983 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCUGUAUCGGAGCAUCGUUGCCUCACAGUCGUUCUUCACUGGCUAGCUUUAUGUCCUCCGACCCCACGCUAAAGCUGCCAGUUGAAGAGCUGUUGUGUGUAACCAUGACAACGAGACUGCUCC
Get precursor sequence
Structure
        10           20        30         40        50        60 
GGCUGUAUCGGAGCAUC---|    CU     UC        -     U       UGUCCUCC 
                    GUUGC  CACAG  GUUCUUCA CUGGC AGCUUUA        G
                    CAAUG  GUGUU  CGAGAAGU GACCG UCGAAAU        A
CCUCGUCAGAGCAACAGUAC^    U-     GU        U     -       CGCACCCC 
  120       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
 +
Sp Sp Sp To
Star sequence

Tni-Mir-22-P1a_5p*

mirBase accessionNone
Sequence
0- CGUUCUUCACUGGCUAGCUUUA -22
Get sequence
Mature sequence

Tni-Mir-22-P1a_3p

mirBase accessionMIMAT0003046
Sequence
42- AAGCUGCCAGUUGAAGAGCUGU -64
Get sequence