MirGeneDB ID | Tni-Mir-22-P1a |
Family name |
MIR-22 (all species) |
Seed |
AGCUGCC |
Species |
Pufferfish (Tetraodon nigroviridis) |
MiRBase ID |
tni-mir-22b
|
Paralogues |
Tni-Mir-22-P1b1
Tni-Mir-22-P1b2
|
Orthologues |
Agr-Mir-22-P1
Bfl-Mir-22-P1
Bko-Mir-22-P1
Bla-Mir-22-P1
Bpl-Mir-22-P1
Cmi-Mir-22-P1a
Cte-Mir-22-P1
Dre-Mir-22-P1a
Eba-Mir-22-P1
Egr-Mir-22-P1
Esc-Mir-22-P1
Gmo-Mir-22-P1a
Gsa-Mir-22-P1
Hru-Mir-22-P1
Lan-Mir-22-P1
Lch-Mir-22-P1a
Lgi-Mir-22-P1
Lhy-Mir-22-P1
Llo-Mir-22-P1
Loc-Mir-22-P1a
Mal-Mir-22-P1a
Mgi-Mir-22-P1
Mom-Mir-22-P1
Npo-Mir-22-P1
Obi-Mir-22-P1
Ofu-Mir-22-P1
Ovu-Mir-22-P1
Pau-Mir-22-P1
Pca-Mir-22-P1
Pcr-Mir-22-P1
Pdu-Mir-22-P1
Pfl-Mir-22-P1
Pve-Mir-22-P1
Rph-Mir-22-P1
Sma-Mir-22-P1
Sme-Mir-22-P1
Snu-Mir-22-P1
Sto-Mir-22-P1a
War-Mir-22-P1
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Bilateria
|
Genome context (Tetraodon_nigroviridis.TETRAODON8.dna.toplevel) |
12: 6138920-6138983 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GGCUGUAUCGGAGCAUCGUUGCCUCACAGUCGUUCUUCACUGGCUAGCUUUAUGUCCUCCGACCCCACGCUAAAGCUGCCAGUUGAAGAGCUGUUGUGUGUAACCAUGACAACGAGACUGCUCC
Get precursor sequence
|
Structure | 10 20 30 40 50 60
GGCUGUAUCGGAGCAUC---| CU UC - U UGUCCUCC
GUUGC CACAG GUUCUUCA CUGGC AGCUUUA G
CAAUG GUGUU CGAGAAGU GACCG UCGAAAU A
CCUCGUCAGAGCAACAGUAC^ U- GU U - CGCACCCC
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Star sequence |
Tni-Mir-22-P1a_5p* |
mirBase accession | None |
Sequence |
0- CGUUCUUCACUGGCUAGCUUUA -22
Get sequence
|
Mature sequence |
Tni-Mir-22-P1a_3p |
mirBase accession | MIMAT0003046 |
Sequence |
42- AAGCUGCCAGUUGAAGAGCUGU -64
Get sequence
|