Mir-22-P1

MirGeneDB ID

Sma-Mir-22-P1

Family name

MIR-22 (all species)

Seed

GCUGCCU

Species

Blood fluke (Schistosoma mansoni)

MiRBase ID

sma-mir-745

Paralogues

Orthologues

Aca-Mir-22-P1b Agr-Mir-22-P1 Ami-Mir-22-P1b Bfl-Mir-22-P1 Bko-Mir-22-P1 Bla-Mir-22-P1 Bpl-Mir-22-P1 Bta-Mir-22-P1b Cfa-Mir-22-P1b Cja-Mir-22-P1b Cli-Mir-22-P1b Cmi-Mir-22-P1a Cmi-Mir-22-P1b Cpi-Mir-22-P1b Cpo-Mir-22-P1b Cte-Mir-22-P1 Dno-Mir-22-P1b Dre-Mir-22-P1a Dre-Mir-22-P1b1 Dre-Mir-22-P1b2 Eba-Mir-22-P1 Ebu-Mir-22-P1o1 Eca-Mir-22-P1b Efe-Mir-22-P1c Efe-Mir-22-P1d Egr-Mir-22-P1 Esc-Mir-22-P1 Ete-Mir-22-P1b Gga-Mir-22-P1b Gja-Mir-22-P1b Gmo-Mir-22-P1a Gmo-Mir-22-P1b1 Gmo-Mir-22-P1b2 Gsa-Mir-22-P1 Hru-Mir-22-P1 Hsa-Mir-22-P1b Laf-Mir-22-P1b Lan-Mir-22-P1 Lch-Mir-22-P1a Lch-Mir-22-P1b Lgi-Mir-22-P1 Lhy-Mir-22-P1 Llo-Mir-22-P1 Loc-Mir-22-P1a Loc-Mir-22-P1b Mal-Mir-22-P1a Mal-Mir-22-P1b1 Mal-Mir-22-P1b2 Mdo-Mir-22-P1b Mgi-Mir-22-P1 Mml-Mir-22-P1b Mmr-Mir-22-P1b Mmu-Mir-22-P1b Mom-Mir-22-P1 Mun-Mir-22-P1b Neu-Mir-22-P1b Npo-Mir-22-P1 Oan-Mir-22-P1b Obi-Mir-22-P1 Ocu-Mir-22-P1b Ofu-Mir-22-P1 Ovu-Mir-22-P1 Pab-Mir-22-P1b Pau-Mir-22-P1 Pbv-Mir-22-P1b Pca-Mir-22-P1 Pcr-Mir-22-P1 Pdu-Mir-22-P1 Pfl-Mir-22-P1 Pma-Mir-22-P1o2 Pma-Mir-22-P1o3 Pve-Mir-22-P1 Rno-Mir-22-P1b Rph-Mir-22-P1 Sha-Mir-22-P1b Sme-Mir-22-P1 Snu-Mir-22-P1 Spt-Mir-22-P1b Sto-Mir-22-P1a Sto-Mir-22-P1b Tgu-Mir-22-P1b Tni-Mir-22-P1a Tni-Mir-22-P1b1 Tni-Mir-22-P1b2 War-Mir-22-P1 Xla-Mir-22-P1b3 Xla-Mir-22-P1b4 Xtr-Mir-22-P1b

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(GCA_000237925.5_SM_V9_genomic)

HE601627.3: 29064404-29064480 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

GAAUAUCUUCAAAAUUUCAUCAUUUACUUCUCGGUUCUUACCAGGCAAGACAUGUUCAUCAUAUUUUUUGUAUUACAAAAAUACAUGCUGCCUGAUAAGAGCUGUGAACAAGUAUGAUUGAUCUUCACCUUAAAUAU

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Structure

        10         20         30        40        50        60         
GAAUAUCUUCAAAAUUUC-     UUAC-|  U         C      A A   GUUCAUCAUAUUUUU 
                   AUCAU     UUC CGGUUCUUA CAGGCA G CAU               \
                   UAGUA     AAG GUCGAGAAU GUCCGU C GUA               U
UAUAAAUUCCACUUCUAGU     UGAAC^  U         A      - -   CAUAAAAACAUUAUG 
     130       120       110       100        90          80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr	Sr

Star sequence

Sma-Mir-22-P1_5p*

mirBase accession

MIMAT0033588

Sequence

0- UCGGUUCUUACCAGGCAAGACAU -23

Get sequence

Mature sequence

Sma-Mir-22-P1_3p

mirBase accession

MIMAT0033589

Sequence

55- UGCUGCCUGAUAAGAGCUGUGA -77

Get sequence