MirGeneDB ID | Gmo-Mir-22-P1a |
Family name |
MIR-22 (all species) |
Seed |
AGCUGCC |
Species |
Cod (Gadus morhua) |
MiRBase ID |
gmo-mir-22b
|
Paralogues |
Gmo-Mir-22-P1b1
Gmo-Mir-22-P1b2
|
Orthologues |
Agr-Mir-22-P1
Bfl-Mir-22-P1
Bko-Mir-22-P1
Bla-Mir-22-P1
Bpl-Mir-22-P1
Cmi-Mir-22-P1a
Cte-Mir-22-P1
Dre-Mir-22-P1a
Eba-Mir-22-P1
Egr-Mir-22-P1
Esc-Mir-22-P1
Gsa-Mir-22-P1
Hru-Mir-22-P1
Lan-Mir-22-P1
Lch-Mir-22-P1a
Lgi-Mir-22-P1
Lhy-Mir-22-P1
Llo-Mir-22-P1
Loc-Mir-22-P1a
Mal-Mir-22-P1a
Mgi-Mir-22-P1
Mom-Mir-22-P1
Npo-Mir-22-P1
Obi-Mir-22-P1
Ofu-Mir-22-P1
Ovu-Mir-22-P1
Pau-Mir-22-P1
Pca-Mir-22-P1
Pcr-Mir-22-P1
Pdu-Mir-22-P1
Pfl-Mir-22-P1
Pve-Mir-22-P1
Rph-Mir-22-P1
Sma-Mir-22-P1
Sme-Mir-22-P1
Snu-Mir-22-P1
Sto-Mir-22-P1a
Tni-Mir-22-P1a
War-Mir-22-P1
|
Node of Origin (locus) |
Vertebrata
|
Node of Origin (family) |
Bilateria
|
Genome context (Gadus_morhua.gadMor1.dna.toplevel) |
contig364380: 190-249 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
GUAGGGCCGUCCAGCCCGGUGCAUCACAGUCGUUCUUCACUAGCUAGCUUUACGCCGCGCUCACGCUAAAGCUGCCAGUUGAAGAGCUGUUGUGAGUAACCAUGACAACCGGCCACCCCC
Get precursor sequence
|
Structure | 10 20 30 40 50
GUAGGGCCGUCCAGCCC-- GCA UC -| A U CGCCGC
GGU UCACAG GUUCUUC ACU GC AGCUUUA G
CCA AGUGUU CGAGAAG UGA CG UCGAAAU C
CCCCCACCGGCCAACAGUA AUG GU U^ C - CGCACU
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Gmo-Mir-22-P1a_5p* |
mirBase accession | MIMAT0044037 |
Sequence |
0- CGUUCUUCACUAGCUAGCUUUA -22
Get sequence
|
Mature sequence |
Gmo-Mir-22-P1a_3p |
mirBase accession | MIMAT0044038 |
Sequence |
38- AAGCUGCCAGUUGAAGAGCUGU -60
Get sequence
|