MirGeneDB 2.1

MirGeneDB ID

Loc-Mir-22-P1a

Family name MIR-22 (all species)
Seed AGCUGCC
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues Loc-Mir-22-P1b 
Orthologues Bfl-Mir-22-o1a  Bfl-Mir-22-P1  Bla-Mir-22-o1a  Bla-Mir-22-P1  Bpl-Mir-22-P1  Cgi-Mir-22-P1  Cmi-Mir-22-P1a  Cte-Mir-22-P1  Dre-Mir-22-P1a  Esc-Mir-22-P1  Gmo-Mir-22-P1a  Lan-Mir-22-P1  Lch-Mir-22-P1a  Lgi-Mir-22-P1  Mal-Mir-22-P1a  Npo-Mir-22-P1  Obi-Mir-22-P1  Ovu-Mir-22-P1  Pfl-Mir-22-P1  Sme-Mir-22-P1  Sto-Mir-22-P1a  Tni-Mir-22-P1a 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(LepOcu1)
LG20: 5528215-5528274 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AUUGUAUGUGAUGGAGAGUUACUCCACAGUCGUUCUUCACUGGCUAGCUUUAUUUUUCUGUCCAUGUAAAGCUGCCAGUUGAAGAGCUGUUGUGGGUGACCAUGACAACAGAACUGGUGC
Get precursor sequence
Structure
        10           20        30         40        50         
AUUGUAUGUGAUGGAGA---|    U      UC        -     U       UUUUUC 
                    GUUAC CCACAG  GUUCUUCA CUGGC AGCUUUA      U
                    CAGUG GGUGUU  CGAGAAGU GACCG UCGAAAU      G
CGUGGUCAAGACAACAGUAC^    -      GU        U     -       GUACCU 
.       110       100         90        80         70        60
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Star sequence

Loc-Mir-22-P1a_5p*

mirBase accessionNone
Sequence
0- CGUUCUUCACUGGCUAGCUUUA -22
Get sequence
Mature sequence

Loc-Mir-22-P1a_3p

mirBase accessionNone
Sequence
38- AAGCUGCCAGUUGAAGAGCUGU -60
Get sequence