Mir-22-P1

MirGeneDB ID

Pau-Mir-22-P1

Family name

MIR-22 (all species)

Seed

GCUGCCU

Species

Horseshoe worm (Phoronis australis)

MiRBase ID

Paralogues

Pau-Mir-22-P2

Orthologues

Aca-Mir-22-P1b Agr-Mir-22-P1 Ami-Mir-22-P1b Bfl-Mir-22-P1 Bko-Mir-22-P1 Bla-Mir-22-P1 Bpl-Mir-22-P1 Bta-Mir-22-P1b Cfa-Mir-22-P1b Cja-Mir-22-P1b Cli-Mir-22-P1b Cmi-Mir-22-P1a Cmi-Mir-22-P1b Cpi-Mir-22-P1b Cpo-Mir-22-P1b Cte-Mir-22-P1 Dno-Mir-22-P1b Dre-Mir-22-P1a Dre-Mir-22-P1b1 Dre-Mir-22-P1b2 Eba-Mir-22-P1 Ebu-Mir-22-P1o1 Eca-Mir-22-P1b Efe-Mir-22-P1c Efe-Mir-22-P1d Egr-Mir-22-P1 Esc-Mir-22-P1 Ete-Mir-22-P1b Gga-Mir-22-P1b Gja-Mir-22-P1b Gmo-Mir-22-P1a Gmo-Mir-22-P1b1 Gmo-Mir-22-P1b2 Gsa-Mir-22-P1 Hru-Mir-22-P1 Hsa-Mir-22-P1b Laf-Mir-22-P1b Lan-Mir-22-P1 Lch-Mir-22-P1a Lch-Mir-22-P1b Lgi-Mir-22-P1 Lhy-Mir-22-P1 Llo-Mir-22-P1 Loc-Mir-22-P1a Loc-Mir-22-P1b Mal-Mir-22-P1a Mal-Mir-22-P1b1 Mal-Mir-22-P1b2 Mdo-Mir-22-P1b Mgi-Mir-22-P1 Mml-Mir-22-P1b Mmr-Mir-22-P1b Mmu-Mir-22-P1b Mom-Mir-22-P1 Mun-Mir-22-P1b Neu-Mir-22-P1b Npo-Mir-22-P1 Oan-Mir-22-P1b Obi-Mir-22-P1 Ocu-Mir-22-P1b Ofu-Mir-22-P1 Ovu-Mir-22-P1 Pab-Mir-22-P1b Pbv-Mir-22-P1b Pca-Mir-22-P1 Pcr-Mir-22-P1 Pdu-Mir-22-P1 Pfl-Mir-22-P1 Pma-Mir-22-P1o2 Pma-Mir-22-P1o3 Pve-Mir-22-P1 Rno-Mir-22-P1b Rph-Mir-22-P1 Sha-Mir-22-P1b Sma-Mir-22-P1 Sme-Mir-22-P1 Snu-Mir-22-P1 Spt-Mir-22-P1b Sto-Mir-22-P1a Sto-Mir-22-P1b Tgu-Mir-22-P1b Tni-Mir-22-P1a Tni-Mir-22-P1b1 Tni-Mir-22-P1b2 War-Mir-22-P1 Xla-Mir-22-P1b3 Xla-Mir-22-P1b4 Xtr-Mir-22-P1b

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Phoronis_australis_GCA_002633005)

NMRA01000012.1: 2068505-2068564 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UGUUUUUGCUGUAUAAAAGUUAGUAGUACACGGCUUUUCACGAGGAAGCUUUUGUUUCGAUGUAUUGAAGCUGCCUGGUGAAGAGCUGUCUAGUGCUAAUACUACAGUCUGGUGUCAGUU

Get precursor sequence

Structure

        10          20        30        40        50         
UGUUUUUGCUGUAUAAAA--|      G  C            G   A      UGUUUC 
                    GUUAGUA UA ACGGCUUUUCAC AGG AGCUUU      G
                    UAAUCGU AU UGUCGAGAAGUG UCC UCGAAG      A
UUGACUGUGGUCUGACAUCA^      G  C            G   G      UUAUGU 
.       110       100        90        80        70        60

Deep sequencing

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3' NTU

Motifs

UGUG in loop

Tissue expression

To

Star sequence

Pau-Mir-22-P1_5p* (predicted)

mirBase accession

None

Sequence

0- CGGCUUUUCACGAGGAAGCUUU -22

Get sequence

Mature sequence

Pau-Mir-22-P1_3p

mirBase accession

None

Sequence

38- AGCUGCCUGGUGAAGAGCUGUC -60

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