MirGeneDB ID | Lch-Mir-22-P1a |
---|---|
Family name | MIR-22 (all species) |
Seed | AGCUGCC |
Species | Coelacanth (Latimeria chalumnae) |
MiRBase ID | |
Paralogues | Lch-Mir-22-P1b |
Orthologues | Agr-Mir-22-P1 Bfl-Mir-22-P1 Bko-Mir-22-P1 Bla-Mir-22-P1 Bpl-Mir-22-P1 Cmi-Mir-22-P1a Cte-Mir-22-P1 Dre-Mir-22-P1a Eba-Mir-22-P1 Egr-Mir-22-P1 Esc-Mir-22-P1 Gmo-Mir-22-P1a Gsa-Mir-22-P1 Hru-Mir-22-P1 Lan-Mir-22-P1 Lgi-Mir-22-P1 Lhy-Mir-22-P1 Llo-Mir-22-P1 Loc-Mir-22-P1a Mal-Mir-22-P1a Mgi-Mir-22-P1 Mom-Mir-22-P1 Npo-Mir-22-P1 Obi-Mir-22-P1 Ofu-Mir-22-P1 Ovu-Mir-22-P1 Pau-Mir-22-P1 Pca-Mir-22-P1 Pcr-Mir-22-P1 Pdu-Mir-22-P1 Pfl-Mir-22-P1 Pve-Mir-22-P1 Rph-Mir-22-P1 Sma-Mir-22-P1 Sme-Mir-22-P1 Snu-Mir-22-P1 Sto-Mir-22-P1a Tni-Mir-22-P1a War-Mir-22-P1 |
Node of Origin (locus) | Vertebrata |
Node of Origin (family) | Bilateria |
Genome context (LatCha1_add) |
JH126621.1: 2124056-2124115 [-] Ensembl |
Precursor (pre-Mir +30nt flank) | AUCAGUGCAGAGUAAACGUUGUACCACAGUCGUUCUUCACUGGCUAACUUUAUUGACUUGUAUAUGUAAAGCUGCCAGUUGAAGAGCUGUUGUGGGCAACCCUAAUCAUUUUAUCAACUGGet precursor sequence |
Structure | 10 20 30 40 50 AUCAGUGCAGAGUAAAC---| A UC - UAA UUGACU GUUGU CCACAG GUUCUUCA CUGGC CUUUA U CAACG GGUGUU CGAGAAGU GACCG GAAAU G GUCAACUAUUUUACUAAUCC^ - GU U UC- GUAUAU . 110 100 90 80 70 60 |
Deep sequencing | |
3' NTU | Unknown |
Motifs | No |
Star sequence | Lch-Mir-22-P1a_5p* (predicted) |
mirBase accession | None |
Sequence |
0- CGUUCUUCACUGGCUAACUUUA -22
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|
Mature sequence | Lch-Mir-22-P1a_3p (predicted) |
mirBase accession | None |
Sequence |
38- AAGCUGCCAGUUGAAGAGCUGU -60
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|