MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-22-P1a

Family name MIR-22 (all species)
Seed AGCUGCC
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-22-P1b 
Orthologues Agr-Mir-22-P1  Bfl-Mir-22-P1  Bko-Mir-22-P1  Bla-Mir-22-P1  Bpl-Mir-22-P1  Cmi-Mir-22-P1a  Cte-Mir-22-P1  Dre-Mir-22-P1a  Eba-Mir-22-P1  Egr-Mir-22-P1  Esc-Mir-22-P1  Gmo-Mir-22-P1a  Gsa-Mir-22-P1  Hru-Mir-22-P1  Lan-Mir-22-P1  Lgi-Mir-22-P1  Lhy-Mir-22-P1  Llo-Mir-22-P1  Loc-Mir-22-P1a  Mal-Mir-22-P1a  Mgi-Mir-22-P1  Mom-Mir-22-P1  Npo-Mir-22-P1  Obi-Mir-22-P1  Ofu-Mir-22-P1  Ovu-Mir-22-P1  Pau-Mir-22-P1  Pca-Mir-22-P1  Pcr-Mir-22-P1  Pdu-Mir-22-P1  Pfl-Mir-22-P1  Pve-Mir-22-P1  Rph-Mir-22-P1  Sma-Mir-22-P1  Sme-Mir-22-P1  Snu-Mir-22-P1  Sto-Mir-22-P1a  Tni-Mir-22-P1a  War-Mir-22-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(LatCha1_add)
JH126621.1: 2124056-2124115 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
AUCAGUGCAGAGUAAACGUUGUACCACAGUCGUUCUUCACUGGCUAACUUUAUUGACUUGUAUAUGUAAAGCUGCCAGUUGAAGAGCUGUUGUGGGCAACCCUAAUCAUUUUAUCAACUG
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Structure
        10           20        30         40        50         
AUCAGUGCAGAGUAAAC---|    A      UC        -     UAA     UUGACU 
                    GUUGU CCACAG  GUUCUUCA CUGGC   CUUUA      U
                    CAACG GGUGUU  CGAGAAGU GACCG   GAAAU      G
GUCAACUAUUUUACUAAUCC^    -      GU        U     UC-     GUAUAU 
.       110       100         90        80         70        60
Deep sequencing
3' NTU Unknown
MotifsNo
Star sequence

Lch-Mir-22-P1a_5p* (predicted)

mirBase accessionNone
Sequence
0- CGUUCUUCACUGGCUAACUUUA -22
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Mature sequence

Lch-Mir-22-P1a_3p (predicted)

mirBase accessionNone
Sequence
38- AAGCUGCCAGUUGAAGAGCUGU -60
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