MirGeneDB 3.0
MirGeneDB ID

Dre-Mir-22-P1a

Family name MIR-22 (all species)
Seed AGCUGCC
Species Zebrafish (Danio rerio)
MiRBase ID dre-mir-22b
Paralogues Dre-Mir-22-P1b1  Dre-Mir-22-P1b2 
Orthologues Agr-Mir-22-P1  Bfl-Mir-22-P1  Bko-Mir-22-P1  Bla-Mir-22-P1  Bpl-Mir-22-P1  Cmi-Mir-22-P1a  Cte-Mir-22-P1  Eba-Mir-22-P1  Egr-Mir-22-P1  Esc-Mir-22-P1  Gmo-Mir-22-P1a  Gsa-Mir-22-P1  Hru-Mir-22-P1  Lan-Mir-22-P1  Lch-Mir-22-P1a  Lgi-Mir-22-P1  Lhy-Mir-22-P1  Llo-Mir-22-P1  Loc-Mir-22-P1a  Mal-Mir-22-P1a  Mgi-Mir-22-P1  Mom-Mir-22-P1  Npo-Mir-22-P1  Obi-Mir-22-P1  Ofu-Mir-22-P1  Ovu-Mir-22-P1  Pau-Mir-22-P1  Pca-Mir-22-P1  Pcr-Mir-22-P1  Pdu-Mir-22-P1  Pfl-Mir-22-P1  Pve-Mir-22-P1  Rph-Mir-22-P1  Sma-Mir-22-P1  Sme-Mir-22-P1  Snu-Mir-22-P1  Sto-Mir-22-P1a  Tni-Mir-22-P1a  War-Mir-22-P1 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(danRer11)		 chr5: 12610815-12610873 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGUAUUGUCUGGCUGGCGUUACUUCACAGUCGUUCUUCACUGGCUAGCUUUAUGUGGCAGCACCUUAAAGCUGCCAGUUGAAGAGCUGUUGUGGGUAACCUUAACAACAGACCACCCAA
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Structure
        10           20        30         40        50         
GGUAUUGUCUGGCUGGC---|     U     UC        -     U       UGUGGC 
                    GUUACU CACAG  GUUCUUCA CUGGC AGCUUUA      \
                    CAAUGG GUGUU  CGAGAAGU GACCG UCGAAAU      A
AACCCACCAGACAACAAUUC^     -     GU        U     -       UCCACG 
       110       100         90        80         70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Br Br Em Ey Gu Gu He Li Li Ov Te
Star sequence

Dre-Mir-22-P1a_5p*
mirBase accessionMIMAT0031943
Sequence 
0- CGUUCUUCACUGGCUAGCUUUA -22
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Mature sequence

Dre-Mir-22-P1a_3p
mirBase accessionMIMAT0001789
Sequence 
37- AAGCUGCCAGUUGAAGAGCUGU -59
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Proposed targets TargetScanFish: dre-miR-22b