MirGeneDB 3.0
MirGeneDB ID

Xtr-Mir-22-P1b

Family name MIR-22 (all species)
Seed AGCUGCC
Species Tropical clawed frog (Xenopus tropicalis)
MiRBase ID xtr-mir-22
Paralogues
Orthologues Aca-Mir-22-P1b  Agr-Mir-22-P1  Ami-Mir-22-P1b  Bfl-Mir-22-P1  Bko-Mir-22-P1  Bla-Mir-22-P1  Bpl-Mir-22-P1  Bta-Mir-22-P1b  Cfa-Mir-22-P1b  Cja-Mir-22-P1b  Cli-Mir-22-P1b  Cmi-Mir-22-P1b  Cpi-Mir-22-P1b  Cpo-Mir-22-P1b  Cte-Mir-22-P1  Dno-Mir-22-P1b  Dre-Mir-22-P1b1  Dre-Mir-22-P1b2  Eba-Mir-22-P1  Eca-Mir-22-P1b  Egr-Mir-22-P1  Esc-Mir-22-P1  Ete-Mir-22-P1b  Gga-Mir-22-P1b  Gja-Mir-22-P1b  Gmo-Mir-22-P1b1  Gmo-Mir-22-P1b2  Gsa-Mir-22-P1  Hru-Mir-22-P1  Hsa-Mir-22-P1b  Laf-Mir-22-P1b  Lan-Mir-22-P1  Lch-Mir-22-P1b  Lgi-Mir-22-P1  Lhy-Mir-22-P1  Llo-Mir-22-P1  Loc-Mir-22-P1b  Mal-Mir-22-P1b1  Mal-Mir-22-P1b2  Mdo-Mir-22-P1b  Mgi-Mir-22-P1  Mml-Mir-22-P1b  Mmr-Mir-22-P1b  Mmu-Mir-22-P1b  Mom-Mir-22-P1  Mun-Mir-22-P1b  Neu-Mir-22-P1b  Npo-Mir-22-P1  Oan-Mir-22-P1b  Obi-Mir-22-P1  Ocu-Mir-22-P1b  Ofu-Mir-22-P1  Ovu-Mir-22-P1  Pab-Mir-22-P1b  Pau-Mir-22-P1  Pbv-Mir-22-P1b  Pca-Mir-22-P1  Pcr-Mir-22-P1  Pdu-Mir-22-P1  Pfl-Mir-22-P1  Pve-Mir-22-P1  Rno-Mir-22-P1b  Rph-Mir-22-P1  Sha-Mir-22-P1b  Sma-Mir-22-P1  Sme-Mir-22-P1  Snu-Mir-22-P1  Spt-Mir-22-P1b  Sto-Mir-22-P1b  Tgu-Mir-22-P1b  Tni-Mir-22-P1b1  Tni-Mir-22-P1b2  War-Mir-22-P1  Xla-Mir-22-P1b3  Xla-Mir-22-P1b4 
Node of Origin (locus) Vertebrata
Node of Origin (family) Bilateria
Genome context
(xenTro9_add)		 chr2: 40225984-40226045 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UAGCCCAUGUUUUUCUGGCCCGCUAGAAGCAGUUCUUCAGUGGCAAGCUUUAUGUUGUUCCUCUGUGCUAAAGCUGCCAGUUGAAGAACUGUUGAAAGUGGCUACUGUUCGACUGGGAUUAU
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Structure
        10           20        30        40         50        60
UAGCCCAUGUUUUUCUG---|  C   AGA             -     A      UGUUGUU 
                    GCC GCU   AGCAGUUCUUCAG UGGCA GCUUUA       C
                    CGG UGA   UUGUCAAGAAGUU ACCGU CGAAAU       C
UAUUAGGGUCAGCUUGUCAU^  -   AAG             G     -      CGUGUCU 
120       110       100         90        80         70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
An Br Em Em He Ve
Star sequence

Xtr-Mir-22-P1b_5p*
mirBase accessionMIMAT0003671
Sequence 
0- AGUUCUUCAGUGGCAAGCUUUA -22
Get sequence
Proposed targets TargetScanVert: xtr-miR-22-5p
Mature sequence

Xtr-Mir-22-P1b_3p
mirBase accessionMIMAT0003672
Sequence 
40- AAGCUGCCAGUUGAAGAACUGU -62
Get sequence
Proposed targets TargetScanVert: xtr-miR-22-3p