Mir-22-P1b3

MirGeneDB ID

Xla-Mir-22-P1b3

Family name

MIR-22 (all species)

Seed

GUUCUUC

Species

African clawed frog (Xenopus laevis)

MiRBase ID

Paralogues

Xla-Mir-22-P1b4

Orthologues

Aca-Mir-22-P1b Agr-Mir-22-P1 Ami-Mir-22-P1b Bfl-Mir-22-P1 Bko-Mir-22-P1 Bla-Mir-22-P1 Bpl-Mir-22-P1 Bta-Mir-22-P1b Cfa-Mir-22-P1b Cja-Mir-22-P1b Cli-Mir-22-P1b Cmi-Mir-22-P1b Cpi-Mir-22-P1b Cpo-Mir-22-P1b Cte-Mir-22-P1 Dno-Mir-22-P1b Eba-Mir-22-P1 Eca-Mir-22-P1b Egr-Mir-22-P1 Esc-Mir-22-P1 Ete-Mir-22-P1b Gga-Mir-22-P1b Gja-Mir-22-P1b Gsa-Mir-22-P1 Hru-Mir-22-P1 Hsa-Mir-22-P1b Laf-Mir-22-P1b Lan-Mir-22-P1 Lch-Mir-22-P1b Lgi-Mir-22-P1 Lhy-Mir-22-P1 Llo-Mir-22-P1 Loc-Mir-22-P1b Mdo-Mir-22-P1b Mgi-Mir-22-P1 Mml-Mir-22-P1b Mmr-Mir-22-P1b Mmu-Mir-22-P1b Mom-Mir-22-P1 Mun-Mir-22-P1b Neu-Mir-22-P1b Npo-Mir-22-P1 Oan-Mir-22-P1b Obi-Mir-22-P1 Ocu-Mir-22-P1b Ofu-Mir-22-P1 Ovu-Mir-22-P1 Pab-Mir-22-P1b Pau-Mir-22-P1 Pbv-Mir-22-P1b Pca-Mir-22-P1 Pcr-Mir-22-P1 Pdu-Mir-22-P1 Pfl-Mir-22-P1 Pve-Mir-22-P1 Rno-Mir-22-P1b Rph-Mir-22-P1 Sha-Mir-22-P1b Sma-Mir-22-P1 Sme-Mir-22-P1 Snu-Mir-22-P1 Spt-Mir-22-P1b Sto-Mir-22-P1b Tgu-Mir-22-P1b War-Mir-22-P1 Xtr-Mir-22-P1b

Node of Origin (locus)

X. laevis

Node of Origin (family)

Bilateria

Genome context
(GCF_001663975.1_XLA_v2)

NC_030726.1: 44743948-44744009 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

UAGGCCGCAUGUUUCUGGCCCACUAGGAGCAGUUCUUCAGUGGCAAGCUUUAUGUUGUUCCUCUGUGCUAAAGCUGCCAGUUGAAGAACUGUUGAAAGUGGCUACUGUUCAACUGGGAUUAU

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Structure

        10           20        30        40         50        60
UAGGCCGCAUGUUUCUG---|  C   AGG             -     A      UGUUGUU 
                    GCC ACU   AGCAGUUCUUCAG UGGCA GCUUUA       C
                    CGG UGA   UUGUCAAGAAGUU ACCGU CGAAAU       C
UAUUAGGGUCAACUUGUCAU^  -   AAG             G     -      CGUGUCU 
120       110       100         90        80         70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17), UGUG in loop

Tissue expression

Em

Mature sequence

Xla-Mir-22-P1b3_5p

mirBase accession

None

Sequence

0- AGUUCUUCAGUGGCAAGCUUUA -22

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Co-mature sequence

Xla-Mir-22-P1b3_3p

mirBase accession

None

Sequence

40- AAGCUGCCAGUUGAAGAACUGU -62

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