MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-22-P1b4

Family name MIR-22 (all species)
Seed GUUCUUC
Species African clawed frog (Xenopus laevis)
MiRBase ID xla-mir-22
Paralogues Xla-Mir-22-P1b3 
Orthologues Aca-Mir-22-P1b  Agr-Mir-22-P1  Ami-Mir-22-P1b  Bfl-Mir-22-P1  Bko-Mir-22-P1  Bla-Mir-22-P1  Bpl-Mir-22-P1  Bta-Mir-22-P1b  Cfa-Mir-22-P1b  Cja-Mir-22-P1b  Cli-Mir-22-P1b  Cmi-Mir-22-P1b  Cpi-Mir-22-P1b  Cpo-Mir-22-P1b  Cte-Mir-22-P1  Dno-Mir-22-P1b  Eba-Mir-22-P1  Eca-Mir-22-P1b  Egr-Mir-22-P1  Esc-Mir-22-P1  Ete-Mir-22-P1b  Gga-Mir-22-P1b  Gja-Mir-22-P1b  Gsa-Mir-22-P1  Hru-Mir-22-P1  Hsa-Mir-22-P1b  Laf-Mir-22-P1b  Lan-Mir-22-P1  Lch-Mir-22-P1b  Lgi-Mir-22-P1  Lhy-Mir-22-P1  Llo-Mir-22-P1  Loc-Mir-22-P1b  Mdo-Mir-22-P1b  Mgi-Mir-22-P1  Mml-Mir-22-P1b  Mmr-Mir-22-P1b  Mmu-Mir-22-P1b  Mom-Mir-22-P1  Mun-Mir-22-P1b  Neu-Mir-22-P1b  Npo-Mir-22-P1  Oan-Mir-22-P1b  Obi-Mir-22-P1  Ocu-Mir-22-P1b  Ofu-Mir-22-P1  Ovu-Mir-22-P1  Pab-Mir-22-P1b  Pau-Mir-22-P1  Pbv-Mir-22-P1b  Pca-Mir-22-P1  Pcr-Mir-22-P1  Pdu-Mir-22-P1  Pfl-Mir-22-P1  Pve-Mir-22-P1  Rno-Mir-22-P1b  Rph-Mir-22-P1  Sha-Mir-22-P1b  Sma-Mir-22-P1  Sme-Mir-22-P1  Snu-Mir-22-P1  Spt-Mir-22-P1b  Sto-Mir-22-P1b  Tgu-Mir-22-P1b  War-Mir-22-P1  Xtr-Mir-22-P1b 
Node of Origin (locus) X. laevis
Node of Origin (family) Bilateria
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030727.1: 33649106-33649167 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGCCAACGUGUUGCUGGCCCACUAGAAGCAGUUCUUCAGUGGCAAGCUUUAUGUUGUUCUUCUGUGCUAAAGCUGCCAGUUGAAGAACUGUUGAAAGCGGCUACUAUUCAUCUUGGAUUAU
Get precursor sequence
Structure
        10           20        30        40         50        60
UUGCCAACGUGUUGCUG---|  CA  AGA             -     A      UGUUGUU 
                    GCC  CU   AGCAGUUCUUCAG UGGCA GCUUUA       C
                    CGG  GA   UUGUCAAGAAGUU ACCGU CGAAAU       U
UAUUAGGUUCUACUUAUCAU^  C-  AAG             G     -      CGUGUCU 
120       110       100         90        80         70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Em
Mature sequence

Xla-Mir-22-P1b4_5p
mirBase accessionMIMAT0046540
Sequence 
0- AGUUCUUCAGUGGCAAGCUUUA -22
Get sequence
Co-mature sequence

Xla-Mir-22-P1b4_3p
mirBase accessionMIMAT0046541
Sequence 
40- AAGCUGCCAGUUGAAGAACUGU -62
Get sequence