MirGeneDB 3.0

MirGeneDB ID

Efe-Mir-22-P1d

Family name MIR-22 (all species)
Seed GCUGCCU
Species Common brandling worm (Eisenia fetida)
MiRBase ID
Paralogues Efe-Mir-22-P1c 
Orthologues Agr-Mir-22-P1  Bfl-Mir-22-P1  Bko-Mir-22-P1  Bla-Mir-22-P1  Bpl-Mir-22-P1  Cte-Mir-22-P1  Eba-Mir-22-P1  Egr-Mir-22-P1  Esc-Mir-22-P1  Gsa-Mir-22-P1  Hru-Mir-22-P1  Lan-Mir-22-P1  Lgi-Mir-22-P1  Lhy-Mir-22-P1  Llo-Mir-22-P1  Mgi-Mir-22-P1  Mom-Mir-22-P1  Npo-Mir-22-P1  Obi-Mir-22-P1  Ofu-Mir-22-P1  Ovu-Mir-22-P1  Pau-Mir-22-P1  Pca-Mir-22-P1  Pcr-Mir-22-P1  Pdu-Mir-22-P1  Pfl-Mir-22-P1  Pve-Mir-22-P1  Rph-Mir-22-P1  Sma-Mir-22-P1  Sme-Mir-22-P1  Snu-Mir-22-P1  War-Mir-22-P1 
Node of Origin (locus) E. fetida
Node of Origin (family) Bilateria
Genome context
(Efe_combined)
Efe-Mir-22-P1d_manual_assembly: 47-107 [+]
Precursor
(pre-Mir +30nt flank)
CAGGUUACCUUGAAGGCAUAGUUGGAGAAACGGUUCUUCAUCAGGCAGCCUUGGUUUUGAAAUAACACAAGCUGCCUGAUUAAGAGCUUUUUCUACGCUGGGCGAUCUUCAGAUCCGAGGA
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Structure
        10           20        30        40        50          
CAGGUUACCUUGAAGGCA---|   UGG     C       C          CUUGGUUUUG 
                     UAGU   AGAAA GGUUCUU AUCAGGCAGC          \
                     GUCG   UCUUU UCGAGAA UAGUCCGUCG          A
AGGAGCCUAGACUUCUAGCGG^   CA-     U       U          AACACAAUAA 
 .       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
 +
To
Star sequence

Efe-Mir-22-P1d_5p*

mirBase accessionNone
Sequence
0- CGGUUCUUCAUCAGGCAGCCU -21
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Mature sequence

Efe-Mir-22-P1d_3p

mirBase accessionNone
Sequence
39- AGCUGCCUGAUUAAGAGCUUUU -61
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