MirGeneDB ID | Efe-Mir-22-P1d |
Family name |
MIR-22 (all species) |
Seed |
GCUGCCU |
Species |
Common brandling worm (Eisenia fetida) |
MiRBase ID |
|
Paralogues |
Efe-Mir-22-P1c
|
Orthologues |
Agr-Mir-22-P1
Bfl-Mir-22-P1
Bko-Mir-22-P1
Bla-Mir-22-P1
Bpl-Mir-22-P1
Cte-Mir-22-P1
Eba-Mir-22-P1
Egr-Mir-22-P1
Esc-Mir-22-P1
Gsa-Mir-22-P1
Hru-Mir-22-P1
Lan-Mir-22-P1
Lgi-Mir-22-P1
Lhy-Mir-22-P1
Llo-Mir-22-P1
Mgi-Mir-22-P1
Mom-Mir-22-P1
Npo-Mir-22-P1
Obi-Mir-22-P1
Ofu-Mir-22-P1
Ovu-Mir-22-P1
Pau-Mir-22-P1
Pca-Mir-22-P1
Pcr-Mir-22-P1
Pdu-Mir-22-P1
Pfl-Mir-22-P1
Pve-Mir-22-P1
Rph-Mir-22-P1
Sma-Mir-22-P1
Sme-Mir-22-P1
Snu-Mir-22-P1
War-Mir-22-P1
|
Node of Origin (locus) |
E. fetida
|
Node of Origin (family) |
Bilateria
|
Genome context (Efe_combined) |
Efe-Mir-22-P1d_manual_assembly: 47-107 [+]
|
Precursor (pre-Mir +30nt flank) |
CAGGUUACCUUGAAGGCAUAGUUGGAGAAACGGUUCUUCAUCAGGCAGCCUUGGUUUUGAAAUAACACAAGCUGCCUGAUUAAGAGCUUUUUCUACGCUGGGCGAUCUUCAGAUCCGAGGA
Get precursor sequence
|
Structure | 10 20 30 40 50
CAGGUUACCUUGAAGGCA---| UGG C C CUUGGUUUUG
UAGU AGAAA GGUUCUU AUCAGGCAGC \
GUCG UCUUU UCGAGAA UAGUCCGUCG A
AGGAGCCUAGACUUCUAGCGG^ CA- U U AACACAAUAA
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
|
|
Star sequence |
Efe-Mir-22-P1d_5p* |
mirBase accession | None |
Sequence |
0- CGGUUCUUCAUCAGGCAGCCU -21
Get sequence
|
Mature sequence |
Efe-Mir-22-P1d_3p |
mirBase accession | None |
Sequence |
39- AGCUGCCUGAUUAAGAGCUUUU -61
Get sequence
|