Mir-22-P2

MirGeneDB ID

Pau-Mir-22-P2

Family name

MIR-22 (all species)

Seed

AGCUGCC

Species

Horseshoe worm (Phoronis australis)

MiRBase ID

Paralogues

Pau-Mir-22-P1

Orthologues

Aae-Mir-22-P2 Aga-Mir-22-P2 Agr-Mir-22-P2 Asu-Mir-22-P2 Bfl-Mir-22-P2a Bfl-Mir-22-P2b Bfl-Mir-22-P2c Bge-Mir-22-P2 Bla-Mir-22-P2a Bla-Mir-22-P2b Bla-Mir-22-P2c Cbr-Mir-22-P2-v1 Cbr-Mir-22-P2-v2 Cel-Mir-22-P2 Csc-Mir-22-P2 Cte-Mir-22-P2 Dan-Mir-22-P2 Dlo-Mir-22-P2 Dma-Mir-22-P2 Dme-Mir-22-P2 Dmo-Mir-22-P2 Dpu-Mir-22-P2 Dsi-Mir-22-P2 Dya-Mir-22-P2 Eba-Mir-22-P2 Esc-Mir-22-P2 Gpa-Mir-22-P2 Hme-Mir-22-P2 Hru-Mir-22-P2 Isc-Mir-22-P2 Lan-Mir-22-P2 Lgi-Mir-22-P2 Lhy-Mir-22-P2 Llo-Mir-22-P2 Lpo-Mir-22-P2f Lpo-Mir-22-P2g Lpo-Mir-22-P2h Lpo-Mir-22-P2i Mgi-Mir-22-P2 Mom-Mir-22-P2 Npo-Mir-22-P2 Ofu-Mir-22-P2j Ofu-Mir-22-P2k Ovu-Mir-22-P2 Pca-Mir-22-P2 Pcr-Mir-22-P2l Pcr-Mir-22-P2m Pdu-Mir-22-P2 Pfl-Mir-22-P2 Pmi-Mir-22-P2 Pve-Mir-22-P2 Rph-Mir-22-P2 Sko-Mir-22-P2 Snu-Mir-22-P2 Spu-Mir-22-P2 Tca-Mir-22-P2-v1 Tca-Mir-22-P2-v2 Tur-Mir-22-P2 War-Mir-22-P2 Xbo-Mir-22-P2d Xbo-Mir-22-P2e

Node of Origin (locus)

Bilateria

Node of Origin (family)

Bilateria

Genome context
(Phoronis_australis_GCA_002633005)

NMRA01000012.1: 2068729-2068787 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

UUGUGGUAGACUGAUGUGAUGGUCUUCUCUGGCCUUUCUCGUGGACGCUAUCCCAGAAUACAACAGGGAGCUGCCAAGUGAAGGGCUGACGUAGACUAGUUGUUCAUCGGGUCCAGACU

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Structure

        10          20         30        40        50          
UUGUGGUAGACUGAUGUGA--      UC-| U        UCG   AC  UA    AGAAU 
                     UGGUCU   UC GGCCUUUC   UGG  GC  UCCC     \
                     AUCAGA   AG UCGGGAAG   ACC  CG  AGGG     A
UCAGACCUGGGCUACUUGUUG      UGC^ -        UGA   GU  --    ACAAC 
       110       100        90         80        70

Deep sequencing

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3' NTU

Motifs

UG at 5p(-14), CNNC at 3p(+17)

Tissue expression

To

Star sequence

Pau-Mir-22-P2_5p* (predicted)

mirBase accession

None

Sequence

0- GGCCUUUCUCGUGGACGCUAUCCC -24

Get sequence

Mature sequence

Pau-Mir-22-P2_3p

mirBase accession

None

Sequence

37- GAGCUGCCAAGUGAAGGGCUGA -59

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