MirGeneDB 3.0

MirGeneDB ID

Pfl-Mir-22-P2

Family name MIR-22 (all species)
Seed CAGCUGC
Species Ptychodera (Ptychodera flava)
MiRBase ID
Paralogues Pfl-Mir-22-P1 
Orthologues Aae-Mir-22-P2  Aga-Mir-22-P2  Agr-Mir-22-P2  Asu-Mir-22-P2  Bfl-Mir-22-P2a  Bfl-Mir-22-P2b  Bfl-Mir-22-P2c  Bge-Mir-22-P2  Bla-Mir-22-P2a  Bla-Mir-22-P2b  Bla-Mir-22-P2c  Cbr-Mir-22-P2-v1  Cbr-Mir-22-P2-v2  Cel-Mir-22-P2  Csc-Mir-22-P2  Cte-Mir-22-P2  Dan-Mir-22-P2  Dlo-Mir-22-P2  Dma-Mir-22-P2  Dme-Mir-22-P2  Dmo-Mir-22-P2  Dpu-Mir-22-P2  Dsi-Mir-22-P2  Dya-Mir-22-P2  Eba-Mir-22-P2  Esc-Mir-22-P2  Gpa-Mir-22-P2  Hme-Mir-22-P2  Hru-Mir-22-P2  Isc-Mir-22-P2  Lan-Mir-22-P2  Lgi-Mir-22-P2  Lhy-Mir-22-P2  Llo-Mir-22-P2  Lpo-Mir-22-P2f  Lpo-Mir-22-P2g  Lpo-Mir-22-P2h  Lpo-Mir-22-P2i  Mgi-Mir-22-P2  Mom-Mir-22-P2  Npo-Mir-22-P2  Ofu-Mir-22-P2j  Ofu-Mir-22-P2k  Ovu-Mir-22-P2  Pau-Mir-22-P2  Pca-Mir-22-P2  Pcr-Mir-22-P2l  Pcr-Mir-22-P2m  Pdu-Mir-22-P2  Pmi-Mir-22-P2  Pve-Mir-22-P2  Rph-Mir-22-P2  Sko-Mir-22-P2  Snu-Mir-22-P2  Spu-Mir-22-P2  Tca-Mir-22-P2-v1  Tca-Mir-22-P2-v2  Tur-Mir-22-P2  War-Mir-22-P2  Xbo-Mir-22-P2d  Xbo-Mir-22-P2e 
Node of Origin (locus) Bilateria
Node of Origin (family) Bilateria
Genome context
(Pfl)
LD346721.1: 582412-582474 [-]
Precursor
(pre-Mir +30nt flank)
CUCAAAUAAGUGCAAUGCUUUGCAUUGCUACACUUCACGCUGCAAGCUAUUGUCAAGUGGUUUAAAUGUCAACAGCUGCUACGUGGAGUGGAGCAAGGUCAAAGGUCAUUUCUUCCAGUCAUA
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Structure
        10          20         30        40        50        60 
CUCAAAUAAGUGCAAUG--     -|A     A         CU   A   A   UCAAGUGG 
                   CUUUG C UUGCU CACUUCACG  GCA GCU UUG        \
                   GAAAC G AACGA GUGAGGUGC  CGU CGA AAC        U
AUACUGACCUUCUUUACUG     U^G     G         AU   -   C   UGUAAAUU 
 120       110       100        90        80         70
Deep sequencing
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CommentIt is unclear if this paralogue group represents the ancestral Mir-22-P2 gene that is seed shifted or a new paralogue derived from the ancestral P1 gene. It is also unclear if this gene is orthologous to the Mir-22-o1 gene in Branchiostoma and Xenoturbella.
3' NTU No
MotifsNo
Tissue expression
 +
To
Star sequence

Pfl-Mir-22-P2_5p* (predicted)

mirBase accessionNone
Sequence
0- CACUUCACGCUGCAAGCUAUUG -22
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Mature sequence

Pfl-Mir-22-P2_3p

mirBase accessionNone
Sequence
41- ACAGCUGCUACGUGGAGUGGAG -63
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