MirGeneDB ID | Dma-Mir-22-P2 |
Family name |
MIR-22 (all species) |
Seed |
GGUCCUU |
Species |
Large common water flea (Daphnia magna) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aae-Mir-22-P2
Asu-Mir-22-P2
Bge-Mir-22-P2
Cbr-Mir-22-P2-v1
Cbr-Mir-22-P2-v2
Cel-Mir-22-P2
Cgi-Mir-22-P2
Csc-Mir-22-P2
Cte-Mir-22-P2
Dan-Mir-22-P2
Dme-Mir-22-P2
Dmo-Mir-22-P2
Dpu-Mir-22-P2
Dsi-Mir-22-P2
Dya-Mir-22-P2
Esc-Mir-22-P2
Hme-Mir-22-P2
Isc-Mir-22-P2
Lan-Mir-22-P2
Lgi-Mir-22-P2
Lpo-Mir-22-P2a
Lpo-Mir-22-P2b
Lpo-Mir-22-P2c
Lpo-Mir-22-P2d
Npo-Mir-22-P2
Ovu-Mir-22-P2
Pfl-Mir-22-o2
Pmi-Mir-22-o2
Sko-Mir-22-o2
Spu-Mir-22-o2
Tca-Mir-22-P2-v1
Tca-Mir-22-P2-v2
|
Node of Origin (locus) |
Bilateria
|
Node of Origin (family) |
Bilateria
|
Genome context (DMA_ASM399081) |
NC_046182.1: 3088010-3088075 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
UUGCCUAUUUAGUUUGUCCCUGUAUUGGGUCGGUCCUUCCCGGGGCACCUUGCCGUUAGGUAGUUGAGCAAGCGAGCUGCCCAGUGAAGGGCUUUCCGAAUCAGGAGAAUGACCACCGUUUCGUUU
Get precursor sequence
|
Structure | 10 20 30 40 50 60
UUGCCUAUUUAGUUUGUC---| U G UC CCG C CGUUAGGU
CCUG AUU GG GGUCCUUC GGGCA CUUGC A
GGAC UAA CC UCGGGAAG CCCGU GAGCG G
UUUGCUUUGCCACCAGUAAGA^ - G UU UGA C AACGAGUU
120 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
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Motifs | CNNC at 3p(+17) |
Tissue expression
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Mature sequence |
Dma-Mir-22-P2_5p |
mirBase accession | None |
Sequence |
0- CGGUCCUUCCCGGGGCACCUUGC -23
Get sequence
|
Star sequence |
Dma-Mir-22-P2_3p* |
mirBase accession | None |
Sequence |
43- GAGCUGCCCAGUGAAGGGCUUUC -66
Get sequence
|